Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0259
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   1.8  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   2.4  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   3.2  
SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_18846| Best HMM Match : I-set (HMM E-Value=0.057)                   26   9.7  
SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         26   9.7  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 106 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 225
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 118 WHWGSVDSISGSRARFQLSGNSGRKHSR 201
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 118 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 222
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 151 SRARFQLSGNSGRKHSRCCTSILRKFSGR 237
           SRA   LS  +  K SR C  I R FSGR
Sbjct: 136 SRAASFLSARAIPKESRGCNCIERVFSGR 164


>SB_18846| Best HMM Match : I-set (HMM E-Value=0.057)
          Length = 87

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 22  LYLRIARRXQKLKEHGASSCISGKXXRRCCNIWHWG-SVDSISG 150
           L   ++    KL E  A +C S    +  CNI+  G S+ S+ G
Sbjct: 8   LTFNVSHNTAKLGETVAITCTSRAYPQAACNIYFQGASISSVGG 51


>SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 109 CNIWHWGSVDSISGSRARF 165
           C + HWGSV + +  RAR+
Sbjct: 35  CQVPHWGSVRTFNVCRARY 53


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 22   LYLRIARRXQKLKEHGASSCISGKXXRRCCNIWHWG-SVDSISG 150
            L   ++    KL E  A +C S    +  CNI+  G S+ S+ G
Sbjct: 1279 LTFNVSHNTAKLGETVAITCTSRAYPQAACNIYFQGASISSVGG 1322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,536,942
Number of Sequences: 59808
Number of extensions: 156311
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)