Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0259
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    28   1.6  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   3.7  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     26   8.5  
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    26   8.5  
AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 76   SCISGKXXRRC--CNIWHWGSVDSISGSRARFQLSGN 180
            +C SG    RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 61   EHGASSCISGKXXRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 231
            EH   SC+SG    +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 232  GRQHC 246
            GR HC
Sbjct: 1250 GR-HC 1253


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 61   EHGASSCISGKXXRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 231
            EH   SC+SG    +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 232  GRQHC 246
            GR HC
Sbjct: 1250 GR-HC 1253


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 224 NLVAGSIVSQ*LLLPW*PPRHEVMLN 301
           N+V  S+ S+ +++ W PP++   +N
Sbjct: 344 NIVVSSVTSESVVITWKPPKYNEAIN 369


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 224 NLVAGSIVSQ*LLLPW*PPRHEVMLN 301
           N+V  S+ S+ +++ W PP++   +N
Sbjct: 344 NIVVSSVTSESVVITWKPPKYNEAIN 369


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 224 NLVAGSIVSQ*LLLPW*PPRHEVMLN 301
           N+V  S+ S+ +++ W PP++   +N
Sbjct: 344 NIVVSSVTSESVVITWKPPKYNEAIN 369


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 145 SGSRARFQLSGNSG 186
           S SR RF+LSGNSG
Sbjct: 308 SRSRGRFELSGNSG 321


>AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical
           protein E03E2.1 protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/52 (25%), Positives = 20/52 (38%)
 Frame = -3

Query: 338 KVRSWSXXENG*CLASPHXXXXXXXXXXXXTQCCRPLNFRSMLVQQRLCFLP 183
           K+  +   EN   + +P               C RP  F ++  QQR  F+P
Sbjct: 387 KIGKYQFLENVQIVVNPWGPHHDREIWGNDVDCFRPSRFENLTEQQRKAFMP 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,777,873
Number of Sequences: 27780
Number of extensions: 108002
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)