Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0259
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             29   0.64 
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    28   2.0  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    26   7.9  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 142 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 234
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 52  KLKEHGASSCISGKXXRRCCNIWHWGSVDSISG 150
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g11040.1 68418.m01290 expressed protein weak similarity to
           hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 118 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSG 234
           WH G  DS +   +    +GN+GR       S+L  ++G
Sbjct: 773 WHVGPTDSDNTMSSGRNAAGNTGRPKDGTSPSLLIHYAG 811


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,497,777
Number of Sequences: 28952
Number of extensions: 103054
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)