Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0258
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.0
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 1.4
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 1.8
04_03_0633 + 18208116-18208732,18209916-18210129 28 2.4
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 3.1
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 28 3.1
05_07_0005 + 26997352-26998674 27 5.5
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 27 5.5
04_04_1304 + 32490971-32491552 27 7.2
05_04_0064 - 17613070-17614749 26 9.5
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 76 GLVVLGPEDWSEISVLNWSQKIS 8
G VV GP W EI + WSQ+ S
Sbjct: 42 GRVVAGPYCWQEIDIQEWSQQQS 64
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 395 IRTTTANSXQXS*RPXCHDXERSSTRALRPYSSEERR 285
++T T + S RP D E ++ L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>04_03_0633 + 18208116-18208732,18209916-18210129
Length = 276
Score = 28.3 bits (60), Expect = 2.4
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = -1
Query: 288 SLGNGDXVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMAC 109
SLG NA+A+L+W+ R G D+ R T A R S+AR
Sbjct: 25 SLGVPPPPARNAVALLMWLGR-----RGGGAGVDAVDRARRLVRTRHDAARLASEARAVL 79
Query: 108 DTGGKASWLLKAW 70
G A L + W
Sbjct: 80 HGGAAALDLARRW 92
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 237 WVWRLTDHLTTASNGSDSSSRGT 169
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 218 SVSRHTQMRTAMAFEVTLSPFPSDAPLTSMDVERAL 325
SVS + R A A S FPS P T DV R L
Sbjct: 139 SVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174
>05_07_0005 + 26997352-26998674
Length = 440
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 345 PRXGAKLNARSTSILVRGASLGNG 274
P+ G +LNA S +I+++GA L +G
Sbjct: 156 PKLGVRLNAVSYNIILKGACLRDG 179
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -3
Query: 391 EPRQRTASRXLEDRGATTRSEAQRALYVHTRQRSVARERRQXDFKRHRSSHLGMAAH 221
E + +S+ ++ + + AQ+ ++Q+ + R+Q +R SSHL +AH
Sbjct: 112 EAHSQQSSQQIQMQQLLLQRHAQQQQQQQSQQQPQQQRRQQKQQQRSESSHLPTSAH 168
>04_04_1304 + 32490971-32491552
Length = 193
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 239 MRTAMAFEVTLSPFPSDAPLTSMDVERALSFAP 337
+RTA A +L P P +P S+D+ S+AP
Sbjct: 49 IRTAAAASASLPPVPGYSPRMSIDMACTHSWAP 81
>05_04_0064 - 17613070-17614749
Length = 559
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 210 TTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDTG 100
+++S+ S S+R + YS+T + R C TG
Sbjct: 37 SSSSSSSSRSARSSNYSSTVSSTESGAGSHRRRCKTG 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,608,108
Number of Sequences: 37544
Number of extensions: 152636
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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