Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0258
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   4.3  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 26   9.8  
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 228 RLTDHLTTASNGSDSSSRGTEYST 157
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = -1

Query: 276 GDXVTSNAIAVLIWVWR-----LTDHLTTASNGSDSSSRGTEYSTTC 151
           G   T ++     W W      LTDH TT ++GS  ++ G      C
Sbjct: 328 GMCYTQDSTDTFDWTWDIANSPLTDHTTTVTSGSTFTTAGNGQGAPC 374


>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 385 RQRTASRXLEDRGATTRSEAQRALYVHTRQRSVARERRQXDFKRHRS 245
           R+R   R   DRG   R E  R      R R   R+R +   +R RS
Sbjct: 137 RRRERDRGERDRGERDRGERDRGERDRRRDRDRDRDRDRDRERRRRS 183


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 201 SNGSDSSSRGTEYSTTCRTARRAYSKA 121
           S GSD+SSR   YS   R+A R+YS++
Sbjct: 408 SVGSDASSRSRSYS---RSASRSYSRS 431


>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1292

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 64  KQPSLQEPRCLATRVTGHARLAIGP 138
           KQ   +E  C A+R+  H RLA  P
Sbjct: 128 KQKEGEEVACFASRLDNHVRLAYAP 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,723,730
Number of Sequences: 59808
Number of extensions: 172530
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)