Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0258
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    29   1.2  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    29   1.2  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    28   2.8  

>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFAPXR 343
           + +A   T SP PSD    S+DV+R L+F   R
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMR 423


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFAPXR 343
           + +A   T SP PSD    S+DV+R L+F   R
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMR 423


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = -1

Query: 327 LNARSTSILVRGASLGNGDXVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 148
           +++ +++I +  +S  +    T+ A + L  + ++T   T A NG   S  G+  +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232

Query: 147 TARRAYSKARMACDTGGKASWLLKAW 70
            +    S    A     K+  L   W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -1

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 88
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 397 TSEPRQRTASRXLE-DRGATTRSEAQRALYVHTRQRSVARERRQ 269
           +S  R R+ SR    DRG   RS ++      TR+RS +RERR+
Sbjct: 46  SSSRRSRSRSRDRRGDRGDRRRSRSRSKDRRTTRRRSPSRERRR 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,601,223
Number of Sequences: 27780
Number of extensions: 112996
Number of successful extensions: 296
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)