Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0258
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.42 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 309 SILVRGASLGNGDXVTSNAIAVLIWVWR 226
           SI  R +++ +GD +T N + + + VWR
Sbjct: 169 SIEARDSAIFDGDFITENNLPLGLEVWR 196


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 59  T*NNQAFKSQDALPPVS 109
           T + Q  KSQ +LPPVS
Sbjct: 286 TLSTQHAKSQASLPPVS 302


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 276 GDXVTSNAIAVLIWVWR 226
           G+ +  NA+ V I +WR
Sbjct: 60  GEYIPENALPVGIEIWR 76


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 10  KSSGTSSIPKFHSSLQDLKQP 72
           +SS  SSIPK + S   + QP
Sbjct: 360 ESSTGSSIPKLNLSTALMSQP 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,350
Number of Sequences: 438
Number of extensions: 1731
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)