Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0257
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 145 4e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 87 2e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 86 3e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 1e-09
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 0.90
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 0.90
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.1
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 26 3.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 145 bits (352), Expect = 4e-36
Identities = 66/105 (62%), Positives = 83/105 (79%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT QM
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTA 316
FDA NMMVA DPRHGRYLTVA +FRG+ K++ R +TK +
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
Score = 138 bits (333), Expect = 8e-34
Identities = 58/85 (68%), Positives = 74/85 (87%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G++SMKEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM++TFIGN+T+IQ I
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEI 377
Query: 433 FKRVSEQFVAMFRRKAFLHWYTGEG 507
F+R+ +QF AMFRRKAFLHWYTGEG
Sbjct: 378 FRRLGDQFSAMFRRKAFLHWYTGEG 402
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/34 (76%), Positives = 28/34 (82%), Gaps = 3/34 (8%)
Frame = +3
Query: 486 ALVHW*---G*DEMEFTEAESNMNDLISEYQQYQ 578
A +HW G DEMEFTEAESNMNDL+SEYQQYQ
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 87.0 bits (206), Expect = 2e-18
Identities = 38/89 (42%), Positives = 54/89 (60%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T Q
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL 268
F+ N MV CDPR GRY+ ++RG+ +
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 65.7 bits (153), Expect = 5e-12
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK--------MASTFIG 408
+G + ++V + I+ K + FV+W P KI +CD PP+ ++ A +
Sbjct: 320 RGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLS 379
Query: 409 NTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEG 507
NTT+I + R+ +F M+ ++AF+HWY GEG
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 412
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 86.2 bits (204), Expect = 3e-18
Identities = 37/89 (41%), Positives = 54/89 (60%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T Q
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL 268
F+ N MV CDPR GRY+ ++RG+ +
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 61.7 bits (143), Expect = 8e-11
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGL--------KMASTFIG 408
+G + ++V + +I+++ + FV+W P KI +C PP+ + A +
Sbjct: 324 RGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLS 383
Query: 409 NTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGEG 507
NTT+I + R+ +F M+ ++AF+HWY GEG
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 416
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPELT 172
S TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 237 SASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVM 296
Query: 173 LQMFDAKNMMVACDP-RHGRYLTVATIFRGE 262
++ KN MV+ +P + ++++ I +GE
Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +1
Query: 244 DDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNT 414
D IQG +V + L I+ + F+ W P + ++A+ P +++ + N
Sbjct: 322 DIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANH 381
Query: 415 TAIQTIFKRVSEQFVAMFRRKAFLHWYTGE 504
T+I ++FKR +Q+ + +R AFL Y E
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQYKKE 411
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 0.90
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 145 SSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDIQGRMSMKEVDEQLANIQNK 309
S+ N R D + + + STR DR D G S++E+D+Q +N+
Sbjct: 253 SANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENR 307
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 0.90
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 296 FASCSSTSFIDIRP*ISSQRSNTSRVEDHTRPSCFWRRTFAASARVQL 153
F+ C T I P + N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 290 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSL--VTRRPYRPYSRGCLSSSWL 463
+R+ K+ ++++ GYP R+P V L+ +L+ + V PY S S +W+
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWI 267
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 239 VATIFRGECL*KKLTSNWRIFRTKTARILSSG 334
+ + +R ECL +L ++ + RT+ A I S+G
Sbjct: 117 LTSTYRSECLLYELLDSFGVSRTRVAAIASTG 148
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 423 YGRRVTNEGRSHFKTPRRYVTHGN 352
+ RR NE R++ +PR + THGN
Sbjct: 254 FRRREDNE-RNNSNSPRNFSTHGN 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,361
Number of Sequences: 5004
Number of extensions: 52113
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -