Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0256
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    67   1e-12
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    29   0.39 
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   6.3  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   6.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 33/62 (53%), Positives = 40/62 (64%)
 Frame = -2

Query: 435 DTYYVVAHXHYVLSXGAVFAIIGGFIN*XPLFTGLSLNSYILKIQFFTIFIGVNITFFPQ 256
           DTY+VVAH HYVLS GA+F + G +    P   GL  N  +  IQF+ +FIGVNI F PQ
Sbjct: 376 DTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWILFIGVNIVFGPQ 434

Query: 255 LF 250
            F
Sbjct: 435 HF 436



 Score = 29.1 bits (62), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 253 FLGLAGIPRRYSDYPD 206
           FLGL G+PRR  DYP+
Sbjct: 436 FLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 340 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFLGL 242
           +RPF KFL  K  IF + YW +  +  T +LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 190 FMKYMSLDNLNIVEVFQLNLKKLWKKCYIYSNKYC 294
           +++  + +N  + EVFQL +    KK + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 238 QLNLKKLWKKCYIYSNKYCK 297
           Q    K WKKC     +YCK
Sbjct: 54  QTGFSKYWKKCTYGIREYCK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,743
Number of Sequences: 5004
Number of extensions: 23245
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)