Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0256
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 78 5e-15
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.057
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.057
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.057
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.057
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.057
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 4.9
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 77.8 bits (183), Expect = 5e-15
Identities = 39/62 (62%), Positives = 41/62 (66%)
Frame = -2
Query: 435 DTYYVVAHXHYVLSXGAVFAIIGGFIN*XPLFTGLSLNSYILKIQFFTIFIGVNITFFPQ 256
DTYYVVAH HYVLS GAVFAI GF TG N KI F+ +FIGVNITFFPQ
Sbjct: 73 DTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQ 132
Query: 255 LF 250
F
Sbjct: 133 HF 134
Score = 35.9 bits (79), Expect = 0.019
Identities = 31/108 (28%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Frame = -1
Query: 319 LYTKNSIFYNIYWSKYNIFSTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
LY K + F FLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171
Query: 139 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHXYNELPIL 8
+ + + + N S S+E Q PPA H YNELP +
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -2
Query: 390 GAVFAIIGGFIN*XPLFTGLSLNSYILKIQFFTIFIGVNITFFPQLF 250
GAVFAI GF TG N KI F+ +FIGVNITFFPQ F
Sbjct: 2 GAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHF 48
Score = 35.9 bits (79), Expect = 0.019
Identities = 31/108 (28%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Frame = -1
Query: 319 LYTKNSIFYNIYWSKYNIFSTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
LY K + F FLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85
Query: 139 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHXYNELPIL 8
+ + + + N S S+E Q PPA H YNELP +
Sbjct: 86 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 34.3 bits (75), Expect = 0.057
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHXYNELPIL 8
S S+E Q PPA H YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 34.3 bits (75), Expect = 0.057
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHXYNELPIL 8
S S+E Q PPA H YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 34.3 bits (75), Expect = 0.057
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHXYNELPIL 8
S S+E Q PPA H YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 34.3 bits (75), Expect = 0.057
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHXYNELPIL 8
S S+E Q PPA H YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 34.3 bits (75), Expect = 0.057
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHXYNELPIL 8
S S+E Q PPA H YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPD 206
FLGLAG PRRYSD+ D
Sbjct: 2 FLGLAGFPRRYSDFAD 17
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 81 ISHHQLNDIKIYHQQNIXIMNYQF 10
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 352 IXFIYRPFIKFLYTKNSIFYNIYWSK--YNIF 263
+ FIY + FL +KN F+ YW+ YN F
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAF 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,351,936
Number of Sequences: 59808
Number of extensions: 140578
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -