Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0254
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 76 4e-15
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 67 1e-12
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 35 0.007
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 29 0.60
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 1.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 3.2
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 7.3
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 7.3
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 25 9.7
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 25 9.7
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 9.7
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 9.7
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 75.8 bits (178), Expect = 4e-15
Identities = 43/103 (41%), Positives = 57/103 (55%)
Frame = +2
Query: 239 SNKNNITSPEIYQPVGPYSQAILAXKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
S K I SP++ GPY+QAI A +Y SG + + + +++ G QTRQ L NL+
Sbjct: 37 STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94
Query: 419 VLEAGGASLESVVKTTVLLASMDDFQTFNKSMAEYFPKACPAR 547
VL G+SL +VK + LA MDDF NK E P PAR
Sbjct: 95 VLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPAR 137
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 67.3 bits (157), Expect = 1e-12
Identities = 33/88 (37%), Positives = 48/88 (54%)
Frame = +2
Query: 284 GPYSQAILAXKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 463
GPY+QA+ + ++ SG + +D V G + QTR ++NL VL G+SLE +VK
Sbjct: 15 GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73
Query: 464 TVLLASMDDFQTFNKSMAEYFPKACPAR 547
+ L +DDF N+ E P PAR
Sbjct: 74 NIFLTDIDDFAAMNEVYKEMLPDPMPAR 101
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 35.1 bits (77), Expect = 0.007
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 380 EAQTRQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKSMAEYF 526
+ + A++NL +L G S ++V TV+L+SM F FN +YF
Sbjct: 324 QGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSKFAEFNSVYNKYF 372
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 281 VGPYSQAILAXKTLYISGILGL 346
+GPYSQ+I A ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.60
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 266 EIYQPVGPYSQAILAXKTLYISGILGLDRDAQMV--CGGAEAQTRQALDNLRHVLEAGGA 439
EIYQP + I KT + I + Q + C G + T++ +D LR ++AGG
Sbjct: 57 EIYQP-----KKIRVLKTREVQYIEEEKKTNQELNDCRGNQLMTQEEIDELRANIKAGGL 111
Query: 440 SLESVVK 460
E +K
Sbjct: 112 RAEEAIK 118
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 535 SFRKIFCHRFVESLEVVHASQQNSSFHDRLQRSATSFKYMSQIVQSL 395
+F +RFV SL + H + + +D+L S SF +S+I + L
Sbjct: 1459 AFHFSISNRFVFSLFMPHLKKVEAIIYDKLPGSDMSFPSISKIYEEL 1505
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 476 ASMDDFQTFNKSMAEYFPKACP 541
A MD F TF++SMA P A P
Sbjct: 477 APMDQFSTFHQSMATLPPGAVP 498
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
S+ +Q F SGQD++ FW +R+ C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 537 QALGKYSAIDLLKVWK 490
QAL KY A++ LK WK
Sbjct: 703 QALPKYVALERLKTWK 718
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 384 ASAPPQTICASRSNPRIPEMYKVLXAKIA 298
A+ P +CA NP+ E+Y + K+A
Sbjct: 26 ANIPADIVCAIDINPQANEIYNLNHGKLA 54
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 191 VFGRQCRIF*AHFYSLDVNRSIVQMTKR 108
+FG+Q AH+YSL+VN ++ +
Sbjct: 111 LFGKQLTDPSAHYYSLEVNPKFAKIASK 138
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 149 SLDVNRSIVQMTKR*HYRCSDSKSMEYLHKCYFIIIIP 36
SLDV ++++ T RC++ + Y K + I IP
Sbjct: 56 SLDVQKNMITQTSLYVLRCNNISTFPYATKIHVINPIP 93
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 24.6 bits (51), Expect = 9.7
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Frame = +2
Query: 59 IYVGIPYSYYLNTDSVIFLSFELLTYLHL---KNKNELRRF---CTG------VRRQSFA 202
I +G PYS ++T SV +EL T L + N++ R+ C G ++R F
Sbjct: 331 IILGFPYSCPIDTWSVGCSLYELYTGQILFPGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390
Query: 203 QNEFSKKFE*Q*SNKNNITSPEIYQPV 283
+ F F + + IT+ E +PV
Sbjct: 391 NDHFDADFNFIQIDHDPITNQETRKPV 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,009
Number of Sequences: 5004
Number of extensions: 45754
Number of successful extensions: 140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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