Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0254
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                     29   3.3  
SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)           29   3.3  
SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)                       27   7.6  

>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 437 RHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSXPLKLLDCTDLLV 276
           +H+L VH+  C   DGSA +  RR   H +  R     +R   ++LLD T +L+
Sbjct: 281 KHRLMVHLWRCAVRDGSA-EAIRRFFQHFEQFR----MLRMWKMQLLDETTILI 329


>SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)
          Length = 363

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 243 LLYCYSNFLLNSF--WAKLCLRTPVQNLLS 160
           LL  +S +  NSF  W+ LC  +P+ +LLS
Sbjct: 90  LLIIHSYYTFNSFVAWSSLCTLSPISDLLS 119


>SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)
          Length = 513

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 434 GASLESVVKTTVLLASMDDFQTFNKSMAEYFP 529
           GA L+S+ ++ V +A ++  Q  NK+M  ++P
Sbjct: 77  GALLKSLDQSEVNMAILESLQKLNKNMESFYP 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,881
Number of Sequences: 59808
Number of extensions: 335766
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)