Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0254
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...    88   4e-18
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    43   1e-04
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    29   2.7  
At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2...    28   3.6  
At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS cla...    28   4.7  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
 Frame = +2

Query: 245 KNNITSPEIYQPVGPYSQAILAXKTLYISGILGL-DRDAQMVCGGAEAQTRQALDNLRHV 421
           K  +++ +    +GPYSQAI A   +++SG+LGL     + V    E QT Q L N+  +
Sbjct: 64  KEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEI 123

Query: 422 LEAGGASLESVVKTTVLLASMDDFQTFNKSMAEYFPKACPAR 547
           L+A GA   SVVKTT++LA + DF+T N+  A+YFP   PAR
Sbjct: 124 LKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPAR 165


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 281 VGPYSQAILAXKTLYISGILGLDRDA-QMVCGGAEAQTRQALDNLRHVLEAGGASLESVV 457
           +GPYSQA L    L+++G LGLD     +   GA A+  QAL N   + E+   S+ S  
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISSSA 484

Query: 458 KTTVLLASMDDFQTFNKSMAEYF 526
              V+  S    Q+    + E F
Sbjct: 485 ILFVVFCSARTKQSERNQLHEKF 507


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 534 ALGKYSAIDLLKVWKSSMLANKTVVFTTDSNEAPPAS 424
           AL  ++  DL + +  S LA KTVVF T   E  PA+
Sbjct: 776 ALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAA 812


>At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2)
           plant glutamate receptor family, PMID:11379626
          Length = 920

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 389 TRQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKSMAEYFPK 532
           T   +D LR + E G  ++E V+     +    D +TF       FP+
Sbjct: 256 TNGVMDGLRSINETGIEAMEGVLGIKTYIPKSKDLETFRSRWKRRFPQ 303


>At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +2

Query: 116 SFELLTYLHLKNKNELRRFCTGVRRQSFAQNEF-SKKFE*Q*SNKNNITSPEIYQPVGPY 292
           S E   +L  + ++  R F + + R S  Q E  + KFE Q +      S E+ Q +   
Sbjct: 7   SSEHKVFLSFRREDTGRTFVSHLYR-SLDQKEIRTYKFENQQAGDGKRISSEVKQAINES 65

Query: 293 SQAILAXKTLYISGILGLDRDAQMV 367
             A++     Y+S +L LD  A+++
Sbjct: 66  RIAVVVISENYVSSVLCLDVLAKII 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,357
Number of Sequences: 28952
Number of extensions: 236192
Number of successful extensions: 609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)