Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0251
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   2.4  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   2.4  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   3.2  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   4.2  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   7.3  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   9.7  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   9.7  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 511 ESKEN*GQVAEAIVKVFVPTF 449
           E  +N  Q+ E+IVK F PTF
Sbjct: 163 EELQNEAQIRESIVKTFFPTF 183


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 237 VRSSFI*PQVTSCVMKLCPVFVXLSVCILKKI 142
           +R+ +  PQV SC +++C +     V ++ +I
Sbjct: 231 IRNDYPFPQVVSCTVEMCNLSTTFDVAVIDEI 262


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 4   TFPFYFQTLHIMTNILL-QVCRSH 72
           TF  YF TLH  T+ LL ++C S+
Sbjct: 134 TFASYFSTLHTPTSALLAEICYSY 157


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 196  NEIVSSLCAVECVHFEKDLSGS 131
            N + SSLC +    FEKDLS S
Sbjct: 1339 NTLFSSLCVIGLGIFEKDLSAS 1360


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 235 DHHTLTETIG*IICNSTLSLVFSERIKITT 324
           D+  + +T+G I C S  +L +SE  ++ T
Sbjct: 503 DYFAVADTVGNIFCYSLSNLTYSELPRVNT 532


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 102 YKVYISKLNKEPDRSFSKCTHSTAQRLDTISLH 200
           +K+Y+  L K+P+ +  +CT ++A R   ++ H
Sbjct: 112 WKLYLQFLMKQPNVTKIRCTFNSALRALPVTQH 144


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 16  YFQTLHIMTNILLQVCRSH 72
           Y+ T HI+T++ L  C+SH
Sbjct: 78  YYHT-HILTSVRLDFCKSH 95


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 102 YKVYISKLNKEPDRSFSKCTHSTAQRLDTISLHMTSLGVK*TT 230
           Y  Y S          S   HST   L T+S++ TS  +  TT
Sbjct: 164 YSTYTSTYLPNSTIDLSILPHSTISTLSTVSINDTSASLSKTT 206


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 48  ITAGMSXSCYRFTISSY*YKVYISKLNKEPDRSFS 152
           ITA  S +C+ FT S    K++ + +   P  S S
Sbjct: 184 ITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSS 218


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 268 FSQSFLXECDGQIVVYLTPSD 206
           FS+ F  EC+  +VVY+   D
Sbjct: 424 FSEEFDKECENNVVVYMPEID 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,498
Number of Sequences: 5004
Number of extensions: 33408
Number of successful extensions: 62
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)