Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0251
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    28   5.1  
AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear recep...    27   8.9  
AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormo...    27   8.9  
AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormo...    27   8.9  

>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 109 FIFLSSIRNQTDLFQNAHTQXHKDWTQFHY 198
           F+ L +++N+T+  +  HTQ  + +T ++Y
Sbjct: 169 FLQLPALKNETENVKEEHTQVDQTYTDYYY 198


>AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear receptor
           NHR-104 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +1

Query: 43  NILLQVCRSHVTDLQLAAINIKFIFLSSIRNQT----DLFQNAHTQXHKDWTQFHYT*RH 210
           N+L  + R +VT  +  A+    +F + + +Q+    DL +N  T   ++  Q+ Y+ +H
Sbjct: 254 NVLEPMLRENVTQFEFLALAALLLFDTGLEDQSDDCMDLCRNVRTLIQREMIQY-YSNKH 312

Query: 211 L 213
           L
Sbjct: 313 L 313


>AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical
           protein Y106G6H.1 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   ETFPFYFQTLHIMTNILLQVCRSHVTDLQLAAINIKFIFLSSI 129
           + F +Y +TLH       +VC + +TDL     +  F + S++
Sbjct: 167 DPFSWYMKTLHYYMKRESEVCNNQITDLNSITEDQLFGYFSTL 209


>AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform c protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +1

Query: 43  NILLQVCRSHVTDLQLAAINIKFIFLSSIRNQT----DLFQNAHTQXHKDWTQFHYT*RH 210
           N+L  + R +VT  +  A+    +F + + +Q+    DL +N  T   ++  Q+ Y+ +H
Sbjct: 254 NVLEPMLRENVTQFEFLALAALLLFDTGLEDQSDDCMDLCRNVRTLIQREMIQY-YSNKH 312

Query: 211 L 213
           L
Sbjct: 313 L 313


>AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform a protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +1

Query: 43  NILLQVCRSHVTDLQLAAINIKFIFLSSIRNQT----DLFQNAHTQXHKDWTQFHYT*RH 210
           N+L  + R +VT  +  A+    +F + + +Q+    DL +N  T   ++  Q+ Y+ +H
Sbjct: 254 NVLEPMLRENVTQFEFLALAALLLFDTGLEDQSDDCMDLCRNVRTLIQREMIQY-YSNKH 312

Query: 211 L 213
           L
Sbjct: 313 L 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,677,105
Number of Sequences: 27780
Number of extensions: 188297
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)