Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0251
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.2  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 9   SILFPDTAYYD*HITAGMSXSCYRFT 86
           S L PD+ ++  HIT      C + T
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKCT 79


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 9   SILFPDTAYYD*HITAGMSXSCYRFT 86
           S L PD+ ++  HIT      C + T
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKCT 79


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 258 RFCXSVMVRSSFI*PQVTSCVMKLCPVFVXLSVCILKKICL 136
           RFC +V+ +   I      CV +L  +     VC+ +  CL
Sbjct: 52  RFCPNVVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKCL 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,928
Number of Sequences: 438
Number of extensions: 1914
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)