Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0250
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.98 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 560 LRMSFEPGQALGK 522
           L+M FEPG+ LGK
Sbjct: 167 LQMGFEPGKGLGK 179


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 280 SRSVQSSNFSGQDLIHFWN 336
           S  ++S + + QDL+  WN
Sbjct: 147 SMMIESLSHTTQDLVFIWN 165


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = +2

Query: 446 ESVVKTTVLLASMDDFQTFNKSMQNIFLKLALARMTYEVSRLPLGSSCGRS 598
           +S++     +  +  F+T + +M N   +LAL +   +  R  + + C ++
Sbjct: 291 DSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKKLREEINTFCPKN 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,475
Number of Sequences: 438
Number of extensions: 3652
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)