Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0249
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0128 - 10437407-10438049,10438097-10438272                       29   2.0  
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867...    28   4.5  

>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGXKAS 88
           S S  +  STTCRT  RA   +   C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164


>08_02_0157 -
           13385589-13385675,13386187-13386357,13386572-13386792,
           13390090-13390240,13390682-13390726,13391121-13391330
          Length = 294

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 237 WVWRLTDHLTTASNGSDSSSRGT 169
           WV  L + +TTASN  D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,281,947
Number of Sequences: 37544
Number of extensions: 122666
Number of successful extensions: 283
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)