Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0249
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    31   0.30 
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein...    29   1.2  
At5g63540.1 68418.m07975 expressed protein  ; expression support...    29   1.6  
At1g31370.1 68414.m03839 expressed protein ; expression supporte...    29   1.6  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    28   2.8  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    27   5.0  
At5g04960.1 68418.m00525 pectinesterase family protein contains ...    27   6.5  
At3g10710.1 68416.m01289 pectinesterase family protein contains ...    27   6.5  
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi...    27   6.5  

>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = -3

Query: 342 RRGAKLNARSTSXXVRGXSLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEY 163
           R+G      S S  + G +L       S A AV +WV   +D++  ++  SD    G   
Sbjct: 65  RKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCGHYT 124

Query: 162 STTCRTARRAYSKARMACDTG 100
               RT+      A++ CD G
Sbjct: 125 QVVWRTSEWV-GCAKVKCDNG 144


>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           nap gene, Arabidopsis thaliana, gb:AJ222713
          Length = 341

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 294 GXSLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEY 163
           G  +G  ++V S+     +  W + D L T   G++ SSRG  Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308


>At5g63540.1 68418.m07975 expressed protein  ; expression supported
           by MPSS
          Length = 602

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 23/59 (38%), Positives = 28/59 (47%)
 Frame = -3

Query: 336 GAKLNARSTSXXVRGXSLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYS 160
           GA   ARS +  V G SL    +VTS    + I   R+ D  TT   GSDS     E+S
Sbjct: 366 GACSGARSFANNVGGNSLDQTSNVTSFVEEMHIDTGRVRD-TTTHIYGSDSGGVAAEFS 423


>At1g31370.1 68414.m03839 expressed protein ; expression supported
           by MPSS
          Length = 193

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 455 KTPFEQRVTILSGXXPXFPXIRTTXANSLQSS*RPXCH 342
           K+ FE+   I S   P  P +RTT  NSL S     CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 VWRLTDHLTTASNGSDSSSRGTEYSTT 154
           +W + DH+T A  GSDS S G+ +  T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 28  SIPKFHSSLQDLKQPSLQXPRCLATRV 108
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At5g04960.1 68418.m00525 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 564

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 285 LGNGDSVTSNAIAVLIWVWRLTD 217
           L N   +TSNA+A++ W+ ++ D
Sbjct: 194 LKNSTEMTSNALAIITWLGKIAD 216


>At3g10710.1 68416.m01289 pectinesterase family protein contains
           similarity to pectinesterase GB:AAB57671 [Citrus
           sinensis]; contains Pfam profile: PF01095 pectinesterase
          Length = 561

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 285 LGNGDSVTSNAIAVLIWVWRLTD 217
           L N   +TSNA+A++ W+ ++ D
Sbjct: 198 LKNSTELTSNALAIITWLGKIAD 220


>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 438 ASYNIKRXVAXISXHPNXXSEQPXELLKTXVPRRGAKLNARS 313
           ++Y+I+     I  +      Q    LK   PRRG KLNA++
Sbjct: 330 STYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKT 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,312,848
Number of Sequences: 28952
Number of extensions: 92048
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)