Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0248
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    23   5.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   5.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    23   7.2  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    23   7.2  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 73  RSKQRLIFKSIKVFTSAFL*NW 8
           R + +L+     +FTSAF+ NW
Sbjct: 91  RRESKLVSHVCSLFTSAFVFNW 112


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 252 TQNITIALNTDGCHRRHP--RRYVSEFNI 172
           TQN+ +ALN  GC  +     R V+++NI
Sbjct: 726 TQNLVLALNKFGCFAKEMVCLRDVNDWNI 754


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -2

Query: 267 HLFFITQNITIALNTDGCHRRHPRRYVSEFNISSCSTCKW*CTESRG 127
           HL+ +   I+     DG     P  +   F  +SCS  K    E+ G
Sbjct: 687 HLYILQSKISQQFQNDGIFACIPIMFGERFYKASCSEIKLSYIENSG 733


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 181 FGNISTRVSSMTTISVKCNSDV 246
           FG ++T  S +  +SV+C  DV
Sbjct: 795 FGKVNTNDSVIPNVSVQCPIDV 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,779
Number of Sequences: 5004
Number of extensions: 8239
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)