Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0247
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6)                      28   8.4  
SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)                   28   8.4  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 262  ETGENRQFIHINEPPIIVQEHDSQPQE 342
            E GE  Q  HIN   I+V E    PQE
Sbjct: 1139 EVGEELQIFHINPGSIVVTELPPSPQE 1165


>SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6)
          Length = 206

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 424 FKNINKQKTLWHDIASHVGTTADECCKK 507
           FK+ NK++  W  +A   G + DE  +K
Sbjct: 39  FKDKNKKENAWKQVAEQAGCSVDEAKRK 66


>SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 424 FKNINKQKTLWHDIASHVGTTADECCKK 507
           FK+ NK++  W  +A   G + DE  +K
Sbjct: 39  FKDKNKKENAWKQVAEQAGCSVDEAKRK 66


>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
          Length = 374

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 494 NVVKNQKFKENLY*ALKKE*VRAKKSNGVHY*FLWKKFXKECKSLP 631
           N+ + ++FKE LY    +E +   KSNG+ +    K F K+C+  P
Sbjct: 123 NLTECKRFKELLY----EERLEFLKSNGLCFKCTGKHFRKDCEETP 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,695,894
Number of Sequences: 59808
Number of extensions: 379434
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)