Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0247
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    29   4.2  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    29   4.2  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    29   4.2  
AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 32  YVYKVFILNTILLFFRTLSCKYL*LFRYFSLKMDMNNPPNQSYWFVLREDQSNVILSTNN 211
           +V  +F+L+T+     T S   + +F +  LK      P + +WF+L+   S  ILST N
Sbjct: 43  FVILLFVLSTVTATLLTASFLIMAVFLWNHLK------PMKFFWFLLQLTISAFILSTLN 96

Query: 212 FVNQNP 229
            V   P
Sbjct: 97  LVFNVP 102


>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 583 MHPIGFLGPNLFFFKSLI*VLLKFLIFYNIHL 488
           MH   ++   LFFF  +I  L  FLI+ N+H+
Sbjct: 483 MHRFHWISQMLFFFGFVIFCLFYFLIYPNLHI 514


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 583 MHPIGFLGPNLFFFKSLI*VLLKFLIFYNIHL 488
           MH   ++   LFFF  +I  L  FLI+ N+H+
Sbjct: 489 MHRFHWISQMLFFFGFVIFCLFYFLIYPNLHI 520


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 583 MHPIGFLGPNLFFFKSLI*VLLKFLIFYNIHL 488
           MH   ++   LFFF  +I  L  FLI+ N+H+
Sbjct: 489 MHRFHWISQMLFFFGFVIFCLFYFLIYPNLHI 520


>AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical
           protein F56A6.5 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +1

Query: 292 INEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKIRLLLKLC----LEDRFKNINKQKTLW 456
           + E  I   E+D   Q     T      DR +++LL K C     E+ F+  N  ++LW
Sbjct: 3   VTECSICYDEYDHDTQIPCIGTCGHTICDRCRLQLLNKRCPHCKRENAFERKNVNRSLW 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,402,728
Number of Sequences: 27780
Number of extensions: 318420
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)