Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0246
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   101   6e-23
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   101   6e-23
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.7  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   3.6  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (242), Expect = 6e-23
 Identities = 44/49 (89%), Positives = 45/49 (91%)
 Frame = +1

Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 402
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWR 109



 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = +2

Query: 74  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (242), Expect = 6e-23
 Identities = 44/49 (89%), Positives = 45/49 (91%)
 Frame = +1

Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 402
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWR 109



 Score = 74.5 bits (175), Expect = 8e-15
 Identities = 35/60 (58%), Positives = 44/60 (73%)
 Frame = +2

Query: 74  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -1

Query: 430 SEVDATVPAPARASWGRTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGT 251
           SE+ AT+P+       +    +   + R PD +  Y   G  E     V    +R ++ T
Sbjct: 99  SELKATLPSLDGRRLSKRNAANHASHHRMPDESASYRTRGEYESSSPRVPQKSLRRYYST 158


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 135 APCTVSLFSEYTDTKGRATDRLISLL 58
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 73  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 183
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 148 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 243
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -1

Query: 439  SPLSEVDATVPAPARASWGRTYV---HHDTCYRRHPDRTYGYHHHGHAE 302
            SP S   A+  APAR S  R+      H+T          G HHH H E
Sbjct: 1266 SPTSSSMASA-APARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNE 1313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,456
Number of Sequences: 5004
Number of extensions: 40316
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)