Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0246
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 110 7e-25
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 36 0.025
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 35 0.032
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.075
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 30 1.2
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26) 29 1.6
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 1.6
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 2.1
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.1
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17) 29 2.8
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 28 4.9
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 4.9
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 27 6.5
SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6) 27 6.5
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 27 6.5
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 27 8.6
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 27 8.6
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 110 bits (264), Expect = 7e-25
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWR 402
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR
Sbjct: 58 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWR 106
Score = 67.3 bits (157), Expect = 7e-12
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = +2
Query: 83 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AG
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAG 56
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 35.5 bits (78), Expect = 0.025
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 244 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 399
GGW Q WG G+ + R GGG R G +G M GG P W
Sbjct: 258 GGWGQGPGGGWGRGQG-RGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGW 308
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 35.1 bits (77), Expect = 0.032
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -1
Query: 415 TVPAPARASWGRTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 278
T+P+P+ + R + HH + H + +HHH H H +
Sbjct: 198 TMPSPSIVIYRRHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.9 bits (74), Expect = 0.075
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 382 RTYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 257
R Y HH C H Y Y+ H H + + H YP RH++
Sbjct: 15 RCYRHHHYCCYCH--HRYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 329 WVPPPRTRGIRATARPVPHD 270
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 244 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 372
GGW + S WG G R +GGG R G +G GG
Sbjct: 6 GGWGRGSGGGWGQGPG-GGWGRGQGGGMGRGPGGGWGRGSGGG 47
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 244 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 372
GGW + S WG R++GGG R G +G M GG
Sbjct: 38 GGWGRGSGGGWG---------RMQGGGMGRGPGGGWGRMQGGG 71
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 244 GGWSQTSAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 399
GG + WG G + R P GGG R G +G M GG P + W
Sbjct: 54 GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 334 TYGYHHHGHAEFGQQHVRYPMI-RHWFGTSLLAHAVGLP-RVLGHRNVN 194
+Y +HHHG E Q V I R W L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
Length = 589
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -1
Query: 469 SSSNGCCQGRSPLSEVDATVPAPARASWGRTYVHHDTCYRRHPDRTYGY-HHHGH 308
SSS+ S S A + P++ S + H RRH R Y + HHH H
Sbjct: 470 SSSSSSSSSSSSSSSTGAQLLTPSKPSSNHNHYHR----RRHHHRNYRHNHHHRH 520
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 278
HH RH R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 211 QELEAALLREQGGWSQTSAESWGTGRA----VARIPR-VRGGGTHRS 336
+ E+AL E+ W+Q AES T RA +AR+ R GT RS
Sbjct: 3432 EHAESALAAERAQWAQEKAESQNTIRAANEEIARLKEDARKAGTERS 3478
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 379 TYVHHDTCYRRHPDRTYGYHHHGHA 305
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 375
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 355 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 263
Y +HP T+ YHH H + ++ ++P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 355 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 263
Y +HP T+ YH H + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
Length = 278
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 361 TCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGTSLL 242
TC+ HP + Y H+ H F Q H + RH+ TS L
Sbjct: 52 TCFPYHPHYHHHYRHNDH-YFHQDH----LYRHYLSTSAL 86
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 150 GRGLAAPCTVSLFSEYTDTKGRATDRLI 67
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 382 RTYVH-HDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 278
R Y H CYRR R + YHHH + +RY
Sbjct: 216 RCYYHCRRRCYRRR--RRHFYHHHPRRYHNHRRLRY 249
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 407 SARQGFVGANIRPPRHMLPKAP*PDLWVPPP 315
+A F G +RPPRH+ ++P P PPP
Sbjct: 316 TALAAFAGPTLRPPRHLPWQSPPPP---PPP 343
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 448 QGRSP--LSEVDATVPAPARASWGRT--YVHHDTCYRRHPDRTYGYHHHGH 308
+G+SP +V+ P R +T Y HH +RR R + +HHH H
Sbjct: 205 KGKSPSLTMKVEDKEAPPIRHLKTKTILYHHHHHHHRRRRRRRHHHHHHHH 255
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 374 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHD 270
RPP H + P PD WVP P R +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283
>SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)
Length = 235
Score = 27.5 bits (58), Expect = 6.5
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 208 VQELEAALLREQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 387
V EL A + R+Q G S E+ R IP+ R GT R+ Q +C ++A
Sbjct: 141 VSELLAQVSRDQAGTGTYSVEALENKRVAVDIPK-RLTGTARAQQEVAPALC---TVWAC 196
Query: 388 TKPWRALAPS 417
+P A+ P+
Sbjct: 197 AQPSHAVRPT 206
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHH 314
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 379 TYVHHDTCYRRHPDRTYGYHHHGHA 305
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHH 314
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHHGH 308
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,678,782
Number of Sequences: 59808
Number of extensions: 368984
Number of successful extensions: 1198
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -