Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0245
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   1.9  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.5  

>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 5   KNIVEYLKGHQLEDVDVDDLMRR 73
           KN+ +Y +G++L+DVD +D + R
Sbjct: 374 KNLDDYGEGNRLDDVDAEDKIAR 396


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 340 MIQLLMDAYKGTLKNXSNESDEKNVGFAMTEEMLKPKGNVXKWTXDELTAQV 495
           + +L +D Y   LK  SN+  + NV    TE +   K    +W    LT QV
Sbjct: 545 LFELFLDDYFLALKFSSNDQKDDNVSEIPTESLEYKKLRCLRW--KSLTEQV 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,153
Number of Sequences: 5004
Number of extensions: 34561
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)