Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0245
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 34 0.091
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 33 0.12
05_04_0137 + 18343106-18344686 31 0.48
06_01_0208 - 1581686-1581715,1581891-1582091,1582628-1582966,158... 31 0.64
02_05_1233 - 35112629-35112844,35112922-35112987,35113222-351132... 28 4.5
12_01_0324 - 2467104-2468633 28 6.0
11_03_0024 - 9035932-9035989,9036190-9036400,9038230-9038638 27 7.9
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 33.9 bits (74), Expect = 0.091
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Frame = +1
Query: 142 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRNKSIPQXVTRFFREIVTSTMXYRLKN 321
R+L W N H L IGCTV N+ ++ + P + +I+ + L N
Sbjct: 193 RVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADL-N 251
Query: 322 NVXXPDMIQLLMDAYKGTLKNXSNESDEKNVGFAMTEEMLKP--KGNVXKWTXDELTAQV 495
P +++L D+ + + S EK + M + K K V ++ D +
Sbjct: 252 LKKTPQLVELFDDS--KDIDEVLSLSPEKMLLRWMNHHLKKAGYKKTVSNFSTDVKDGEA 309
Query: 496 FIFFLRDL 519
+ + L+ L
Sbjct: 310 YAYLLKAL 317
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 142 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRNKSIPQXVTRFFREIVTSTMXYRLKN 321
++L +W N H L IGCTV N+ ++ + P + +I+ + + N
Sbjct: 220 KLLNLWEKNENHTLCLNSAKAIGCTVVNIGTQDLAEGRPHLILGLISQIIKIQLLADV-N 278
Query: 322 NVXXPDMIQLLMDA 363
P +++L+ D+
Sbjct: 279 LKSTPQLVELVEDS 292
>05_04_0137 + 18343106-18344686
Length = 526
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 41 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVD---KDNEFYECGQAMFSTSWPQRFKMILA 211
E VD+ D +RR+ D I FG++ ++L++ +D+ +E A F + F+ L
Sbjct: 175 EAVDLQDALRRFAFDSICHVAFGVESSTLLETAREDSGRHEALFAAFDAAVEISFRRAL- 233
Query: 212 AQFPTLAKKIGI 247
A F + K G+
Sbjct: 234 APFTLVRKLTGL 245
>06_01_0208 -
1581686-1581715,1581891-1582091,1582628-1582966,
1583274-1583558,1583769-1583984,1584395-1584739
Length = 471
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 47 VDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQA 166
+++ DL+ R T D I GFG ++N+L D + +A
Sbjct: 184 INIQDLLMRATMDSIFKVGFGFELNTLSGSDESGIQFSKA 223
>02_05_1233 -
35112629-35112844,35112922-35112987,35113222-35113282,
35115319-35115401,35115483-35115563,35115661-35115693,
35115841-35115942,35116023-35116118,35116205-35116366,
35116469-35116660,35116742-35116852,35116940-35117011,
35117111-35117324,35117422-35117699
Length = 588
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 41 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYE 154
EDV+++ L R T DVI A F +SL DN E
Sbjct: 253 EDVEMESLFSRLTLDVIGKAVFNYDFDSL-SYDNGIVE 289
>12_01_0324 - 2467104-2468633
Length = 509
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 47 VDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTS 181
VD+ D+ RR+ D I FGL L D++ E A + S
Sbjct: 174 VDLQDVFRRFAFDTICKISFGLDPGCL-DREMPVSELADAFDAAS 217
>11_03_0024 - 9035932-9035989,9036190-9036400,9038230-9038638
Length = 225
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +2
Query: 14 VEYLKGHQLEDVDVDDLMRRYTXDVIASAGFG-----LQVNSLVDKDNEFYECGQAMFST 178
+E LK LE V+D +RY DV S GFG + K ++C +F +
Sbjct: 111 IEKLKNQVLE---VNDRRKRYKLDVSVSMGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVS 167
Query: 179 SWPQRFKMIL 208
P +++L
Sbjct: 168 QMPDMKRILL 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,329
Number of Sequences: 37544
Number of extensions: 205624
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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