Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0245
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37) 37 0.010
SB_1738| Best HMM Match : p450 (HMM E-Value=0) 36 0.023
SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16) 36 0.023
SB_34556| Best HMM Match : p450 (HMM E-Value=0) 32 0.38
SB_35141| Best HMM Match : p450 (HMM E-Value=0) 31 0.66
SB_51175| Best HMM Match : p450 (HMM E-Value=0) 31 0.87
SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_56677| Best HMM Match : p450 (HMM E-Value=1.1e-10) 29 3.5
SB_5471| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
Length = 492
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 47 VDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYEC-GQAMFSTSW 184
+D++D ++R D++ FG+++NS+ D + FY ++ +T W
Sbjct: 187 IDMEDFVKRMALDIMGKVAFGIKINSIEDPNTPFYTALEESRSATHW 233
>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
Length = 484
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 41 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTS-WPQRFKMILAAQ 217
E D +L + DVI + FG++ + D D+ FY+ + F T W + F M ++
Sbjct: 162 ESTDCVNLFSLFALDVITISAFGVETDIQTDPDSSFYKLAKKAFRTPIWVRAFSMFPFSE 221
Query: 218 F 220
+
Sbjct: 222 Y 222
>SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)
Length = 377
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 41 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTS-WPQRFKMILAAQ 217
E D +L + DVI + FG++ + D D+ FY+ + F T W + F M ++
Sbjct: 66 ESTDCVNLFSLFALDVITISAFGVETDIQTDPDSSFYKLAKKAFRTPIWVRAFSMFPFSE 125
Query: 218 F 220
+
Sbjct: 126 Y 126
>SB_34556| Best HMM Match : p450 (HMM E-Value=0)
Length = 408
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 41 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFS-TSWPQRFKMILAAQ 217
E VD L + +VI SA FG + D EF + +F+ +W + F MI A
Sbjct: 89 ESVDCIRLFSLFALEVIMSAAFGYHADVQTAPDEEFVAKARNVFAIPAWRRFFSMIPFAD 148
Query: 218 F 220
F
Sbjct: 149 F 149
>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +2
Query: 5 KNIVEYLKGHQLEDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTSW 184
K+I+ Y E VD+ + + T +VI S FG+ + +N F + + +F +
Sbjct: 232 KSILYYESESNGESVDILGMFCQMTLEVILSTAFGIDSEVQKNPNNTFSDKAKEIFKS-- 289
Query: 185 PQRFKMILAAQFPTLAKKI 241
P +M L F ++ KI
Sbjct: 290 PTFLRMFLMLPFASVFFKI 308
>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
Length = 408
Score = 30.7 bits (66), Expect = 0.87
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2
Query: 41 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTSWPQRFKMILAAQF 220
+ VDV ++T + I S FG+ + + +++F Q F P F ILA F
Sbjct: 82 KSVDVCRTYVKFTMETIVSTAFGIDCQTQTNPNDQFLSNAQRYFGK--PSPF-TILAVLF 138
Query: 221 PTLAKKIGIKV 253
P L I + V
Sbjct: 139 PYLQPIISVMV 149
>SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 44 DVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEF 148
+V + D + T DVI GF + VNS+ D+++ F
Sbjct: 31 EVRMADEFAKVTLDVIGKVGFNIDVNSIGDENSPF 65
>SB_56677| Best HMM Match : p450 (HMM E-Value=1.1e-10)
Length = 606
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 59 DLMRRYTXDVIASAGFGLQVNSLVDKDNEF 148
D R T DVI F L + +L DKD+ F
Sbjct: 100 DQFHRITMDVIMKVAFSLDLKTLDDKDSTF 129
>SB_5471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 41 EDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFYECGQAMFSTSWPQRFKMILAAQF 220
+ VDV ++T + I + FG+ + + +++F Q +F F+M LA F
Sbjct: 207 KSVDVLRSYGKFTMETIVTTAFGIDCQTQTNPNDQFVPNAQRLFGGQ--SLFRM-LAVLF 263
Query: 221 PTLAKKIGIKV 253
P L + + V
Sbjct: 264 PYLQPIVSLMV 274
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,441
Number of Sequences: 59808
Number of extensions: 249493
Number of successful extensions: 505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -