Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0245
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    33   0.13 
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    30   0.94 
At1g67110.1 68414.m07635 cytochrome P450, putative similar to Cy...    29   1.6  
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo...    28   5.0  
At3g24260.1 68416.m03047 hypothetical protein                          27   6.6  

>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +1

Query: 142 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRNKSIPQXVTRFFREIVTSTMXYRLKN 321
           R+L  W  N  H L       +GC+V N+  ++  +  P  V     +++   +   L N
Sbjct: 187 RVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQVLADL-N 245

Query: 322 NVXXPDMIQLLMDA 363
               P +++LL D+
Sbjct: 246 LKKTPQLVELLEDS 259


>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = +1

Query: 142 RILRVWSSNV*HKLATEI*NDIGCTVSNVSQENRNKSIPQXVTRFFREIVTSTMXYRLKN 321
           R+L  W  N  H L       +GC+V N+  ++  +  P  V     +++   +   L  
Sbjct: 188 RVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLSL 247

Query: 322 NVXXPDMIQLLMD 360
               P +++L+ D
Sbjct: 248 K-KMPQLVELVED 259


>At1g67110.1 68414.m07635 cytochrome P450, putative similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
          Length = 512

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 2   SKNIVEYLKGHQLEDVDVDDLMRRYTXDVIASAGFGLQVNSLVDKDNEFY 151
           +K + E L+    E+V++ + MRR T D+I+   FG    S  DK  E +
Sbjct: 180 TKMMAERLRKEVGEEVEIGEEMRRLTADIISRTEFG----SSCDKGKELF 225


>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
           similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
           (EPI64 protein) {Homo sapiens}; contains Pfam profile
           PF00566: TBC domain
          Length = 777

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 511 AGRR*KLVRSVRXGSIFXHSPLVLTSLLS*QNLHFFRL--IRCSH 383
           AG    L++S+  GS F  S LVLT+ +  QN+H  RL  +R  H
Sbjct: 478 AGDAVTLLQSLT-GSTFDSSQLVLTACMGYQNVHEIRLQELRSKH 521


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 307 YRLKNNVXXPDMIQLLMDAYKGTLKNXSNESDEKNVGFAMTEEMLKPKGNVXKWTXDELT 486
           YR   N+   DM++++ + ++  L    N  ++K     +  E LKP   V K T ++L+
Sbjct: 300 YRCAENLYGRDMLEIVKENHQRVLPAILNRLNQKLREVTLVRERLKP---VLKQTIEKLS 356

Query: 487 AQ 492
            +
Sbjct: 357 TR 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,168,717
Number of Sequences: 28952
Number of extensions: 176164
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)