Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0244
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    62   4e-11
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    25   5.6  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    25   7.3  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   9.7  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   9.7  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   9.7  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.7  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 24/38 (63%), Positives = 33/38 (86%)
 Frame = +1

Query: 124 ILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDY 237
           +LDDL +RFI+NLPAE++ ++ R+CFQIE AHWFY D+
Sbjct: 11  VLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDF 48



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 26/75 (34%), Positives = 41/75 (54%)
 Frame = +3

Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
           G+R F+A +F H P L +     +   D++  YK  +P  GAI         +LV+ +  
Sbjct: 60  GLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKA 119

Query: 453 KASWGFPKGKVNEDE 497
            + WGFPKGK+++DE
Sbjct: 120 SSGWGFPKGKIDKDE 134



 Score = 28.7 bits (61), Expect = 0.60
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 503 LECATREVLEETGFD 547
           ++CA REV EETGFD
Sbjct: 137 VDCAIREVYEETGFD 151


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 435 VQSYWTKASWGFPKGKVNEDEE 500
           +Q     A W +P+GKV+E +E
Sbjct: 29  IQLSLNSAKWEYPEGKVHETQE 50


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 311 DMLENMCCKLSNTTGVYF 258
           DML   CC   N  G+YF
Sbjct: 129 DMLNTDCCVFYNNHGIYF 146


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 31  AQNIINGKTTDADMSSTIMNSSHNKHSIPID 123
           A+N  NG  +  +++S+I  + H   ++P+D
Sbjct: 774 AENRENGLRSAGELASSINETQHGCRAVPLD 804


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 361 GENINRLYLHTELYCSMMTSLMCFL--YNHIGQKPPGVSLKG 480
           GENI R ++HT  +  + T L+      N I +K   +S+ G
Sbjct: 174 GENIYRTHIHTTTHGELTTKLLIGADGRNSIVRKYANISMPG 215


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 462 WGFPKGKVNEDEEPWNVLLE 521
           +GF KG   E+EE WN + E
Sbjct: 342 FGFGKGLEQENEEEWNGINE 361


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 373 LYSLQLSKTASR-LLTCSRSCGTCWK 299
           L +L ++ TA   L+ C+R+ GTCWK
Sbjct: 467 LAALDIAWTADNSLILCTRN-GTCWK 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,304
Number of Sequences: 5004
Number of extensions: 46927
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)