Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0244
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921...    58   5e-09
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659...    29   2.4  
03_04_0111 + 17364496-17364612,17364741-17364915,17365847-173658...    28   4.3  
01_01_0087 - 647434-647523,647582-648329,650477-650745                 28   5.6  
05_05_0200 - 23171803-23171906,23172304-23173951                       27   9.9  
03_02_1000 + 13111912-13112572,13112616-13113172                       27   9.9  

>02_05_1142 -
           34391144-34391590,34391715-34391904,34392058-34392128,
           34392403-34392515,34392656-34392749,34392843-34392908,
           34393120-34393282,34393441-34393547,34393918-34394115,
           34394204-34394329,34394800-34394904,34395056-34395098,
           34395334-34395391,34395479-34395659,34395751-34395917,
           34396010-34396249,34396341-34396781,34397147-34397272,
           34397457-34397561,34397935-34398002,34398169-34398272,
           34398856-34399008,34399472-34399570,34399919-34400046,
           34400149-34400300,34400423-34400502
          Length = 1274

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +1

Query: 85  MNSSHNKHSIPI-DILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLD 234
           +N S ++  +P  ++LDDLCSRF++N+P ED  +  RI F +E AHWFY D
Sbjct: 7   LNRSSSRGQLPPQELLDDLCSRFVLNVPKEDLESFERILFLLEQAHWFYED 57



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/74 (35%), Positives = 40/74 (54%)
 Frame = +3

Query: 279 REFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWTKA 458
           ++F   +F     LR + + LD +  ++  YK  VP  GAI         LLV+ + + A
Sbjct: 72  KDFTTLMFNSCAALRPYRAHLDDIYKDFTHYKFRVPVCGAIILDDTYEKCLLVKGWKSSA 131

Query: 459 SWGFPKGKVNEDEE 500
           SW FP+GK ++DEE
Sbjct: 132 SWSFPRGKRSKDEE 145


>05_02_0100 +
           6594787-6594878,6595443-6595728,6595809-6595887,
           6595964-6596013,6597281-6597478,6597555-6597612,
           6598388-6598496,6599253-6599321,6599684-6599812,
           6599970-6600082,6600386-6600479,6602827-6602917,
           6604145-6604233,6604715-6604856,6605849-6606196,
           6606314-6607408
          Length = 1013

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 109 SIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVVLESL 288
           SIP   L   C  F++ LP +D        F   L    Y++ +  D  R + P+ ++S 
Sbjct: 477 SIPFVYLCKSCVPFVVQLPQQDNS------FDCGLFLLHYVELFLMDTPRSFNPLKIDSF 530

Query: 289 QHIFSN 306
            +  S+
Sbjct: 531 ANYLSD 536


>03_04_0111 +
           17364496-17364612,17364741-17364915,17365847-17365899,
           17372593-17372655,17372794-17372844,17372949-17373066,
           17373145-17373260
          Length = 230

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 370 YSLQLSKTASRLLTCSRSCGTCWKICAANSLIPQGYTFLIRQCSNNPN 227
           Y+L L  TA    + ++S G  W +C A          + +    NPN
Sbjct: 99  YALALDMTAREFQSAAKSAGLPWTLCKAQDTFTPISAVIPKSAVANPN 146


>01_01_0087 - 647434-647523,647582-648329,650477-650745
          Length = 368

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 82  IMNSSHNKHSIPIDILDDLCSRFIINLPAEDRG 180
           + NS +++  +P D L+++ S     +  EDRG
Sbjct: 295 LRNSPYSRSKLPADTLENIVSNIASQIDGEDRG 327


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 232 DYYCTDESRKYTPVVLESLQHIFSNMSR 315
           DYY   E R YT  +    QH+ + +SR
Sbjct: 458 DYYDIAEDRSYTEQITARSQHVMTPLSR 485


>03_02_1000 + 13111912-13112572,13112616-13113172
          Length = 405

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 115 PIDILDDLCSRFIINLPAEDRGNLVRICFQ 204
           P+ + DD+ +  ++ +PA   G L  +C Q
Sbjct: 12  PVSLSDDMVAEILLLVPANSVGRLAAVCKQ 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,124
Number of Sequences: 37544
Number of extensions: 266784
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)