Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0244
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical pr...    84   7e-17
Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical pr...    84   7e-17
DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping...    84   7e-17
AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical ...    84   7e-17
AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical ...    84   7e-17
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z68336-7|CAL69738.1|  236|Caenorhabditis elegans Hypothetical pr...    27   6.7  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    27   6.7  
U23453-2|AAV58891.1|  464|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U23453-1|AAP86622.1|  484|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +3

Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
           G R+F   + QH   LR++    D VL  +REYK TVPTYGAI       HV+LVQSY+ 
Sbjct: 204 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 263

Query: 453 KA-SWGFPKGKVNEDEEP 503
           K  +WGFPKGK+N+ E P
Sbjct: 264 KGKNWGFPKGKINQAEPP 281



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/55 (43%), Positives = 35/55 (63%)
 Frame = +1

Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
           IP DILD+L  RFI N+   +  + +R+CF +ELAHW+Y+D+   D+     P V
Sbjct: 149 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 203


>Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +3

Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
           G R+F   + QH   LR++    D VL  +REYK TVPTYGAI       HV+LVQSY+ 
Sbjct: 227 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 286

Query: 453 KA-SWGFPKGKVNEDEEP 503
           K  +WGFPKGK+N+ E P
Sbjct: 287 KGKNWGFPKGKINQAEPP 304



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/55 (43%), Positives = 35/55 (63%)
 Frame = +1

Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
           IP DILD+L  RFI N+   +  + +R+CF +ELAHW+Y+D+   D+     P V
Sbjct: 172 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 226


>DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping
           protein protein.
          Length = 770

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +3

Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
           G R+F   + QH   LR++    D VL  +REYK TVPTYGAI       HV+LVQSY+ 
Sbjct: 188 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 247

Query: 453 KA-SWGFPKGKVNEDEEP 503
           K  +WGFPKGK+N+ E P
Sbjct: 248 KGKNWGFPKGKINQAEPP 265



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/55 (43%), Positives = 35/55 (63%)
 Frame = +1

Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
           IP DILD+L  RFI N+   +  + +R+CF +ELAHW+Y+D+   D+     P V
Sbjct: 133 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 187


>AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +3

Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
           G R+F   + QH   LR++    D VL  +REYK TVPTYGAI       HV+LVQSY+ 
Sbjct: 204 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 263

Query: 453 KA-SWGFPKGKVNEDEEP 503
           K  +WGFPKGK+N+ E P
Sbjct: 264 KGKNWGFPKGKINQAEPP 281



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/55 (43%), Positives = 35/55 (63%)
 Frame = +1

Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
           IP DILD+L  RFI N+   +  + +R+CF +ELAHW+Y+D+   D+     P V
Sbjct: 149 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 203


>AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +3

Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
           G R+F   + QH   LR++    D VL  +REYK TVPTYGAI       HV+LVQSY+ 
Sbjct: 227 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 286

Query: 453 KA-SWGFPKGKVNEDEEP 503
           K  +WGFPKGK+N+ E P
Sbjct: 287 KGKNWGFPKGKINQAEPP 304



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/55 (43%), Positives = 35/55 (63%)
 Frame = +1

Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
           IP DILD+L  RFI N+   +  + +R+CF +ELAHW+Y+D+   D+     P V
Sbjct: 172 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 226


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 313 GTCWKICAANSLIPQGYTFLIRQCSNNPN 227
           GT W+IC       +GY     QC +NPN
Sbjct: 172 GTSWRICVKKE---EGYLGCYLQCESNPN 197


>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +1

Query: 154 INLPAEDRGNLVRICFQI-ELA--HWFYLDYYCTDES-RKYTPVVLESLQHIFSNMSR 315
           IN   +D+ +++++   I E++   W YL+Y+C + + R   P V++    +  NM R
Sbjct: 683 INTNYKDKAHILKVNLNIHEMSPVKWLYLNYFCIETNPRLNGPYVIDPRVPLVRNMFR 740


>Z68336-7|CAL69738.1|  236|Caenorhabditis elegans Hypothetical
           protein F22B3.10 protein.
          Length = 236

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 206 SNWLIGFIWIITALTNQESIPLWY*RVCSTYFPTCPATPRT 328
           SNW I + W++           +Y R+       C +TP+T
Sbjct: 119 SNWKISYTWLVNLYIKFFKSSSFYVRIDGKRTTACQSTPKT 159


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 187  VRICFQIELAHWFYLDYYCTDESRKYTPVVLESLQHIFSNMSRNSENMLAV 339
            VR+    +  H  +++Y     SRK+ PV +E L  +  ++  + E  LAV
Sbjct: 1919 VRVTVSDDAGHVAFMEYLFHPHSRKHFPVFVEKLDTV--SVREHDEQELAV 1967


>U23453-2|AAV58891.1|  464|Caenorhabditis elegans Hypothetical
           protein B0252.3c protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 358 LSKTASRLLTCSRSCGTCWKICAANSLIPQGYTFLIRQCSNN 233
           L K+   +LTC   CG  W   A   L P   +F+++   N+
Sbjct: 16  LDKSNRHILTCILVCGLAWSPLAFTGLCP---SFVVKASENS 54


>U23453-1|AAP86622.1|  484|Caenorhabditis elegans Hypothetical
           protein B0252.3b protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 358 LSKTASRLLTCSRSCGTCWKICAANSLIPQGYTFLIRQCSNN 233
           L K+   +LTC   CG  W   A   L P   +F+++   N+
Sbjct: 36  LDKSNRHILTCILVCGLAWSPLAFTGLCP---SFVVKASENS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,330
Number of Sequences: 27780
Number of extensions: 258433
Number of successful extensions: 730
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)