Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0243
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    107   4e-24
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   107   4e-24
12_02_0154 + 14494319-14495857                                         28   5.6  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   7.5  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   9.9  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   9.9  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  107 bits (258), Expect = 4e-24
 Identities = 50/78 (64%), Positives = 61/78 (78%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KD
Sbjct: 82  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 141

Query: 438 ELIIEGNSLEDVSSSAAL 491
           EL+++GN +E VS SAAL
Sbjct: 142 ELVLDGNDIELVSRSAAL 159



 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 40/80 (50%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 195
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 196 GSKKELAAVRTVCSHVENMI 255
           G+++ +AA+RT  SHV+N+I
Sbjct: 61  GTRRTMAAIRTAISHVQNLI 80



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 506 YVKNKXIRKFLDGL 547
           +VKNK IRKFLDG+
Sbjct: 165 HVKNKDIRKFLDGI 178


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  107 bits (258), Expect = 4e-24
 Identities = 50/78 (64%), Positives = 61/78 (78%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KD
Sbjct: 75  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 134

Query: 438 ELIIEGNSLEDVSSSAAL 491
           EL+++GN +E VS SAAL
Sbjct: 135 ELVLDGNDIELVSRSAAL 152



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 37/73 (50%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
 Frame = +1

Query: 46  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 216
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 217 AVRTVCSHVENMI 255
           A+RT  SHV+N+I
Sbjct: 61  AIRTAISHVQNLI 73



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 506 YVKNKXIRKFLDGL 547
           +VKNK IRKFLDG+
Sbjct: 158 HVKNKDIRKFLDGI 171


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 106 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKE*LKA 273
           P+ VL+   KH+  D+   +  L ++E+ F +K+ L     V  H +NM++E LK+
Sbjct: 250 PKPVLRP--KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 115 VLKRNF-KHLAVDIRMVNPRLLKVE 186
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 79  KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 255
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S+V  M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201

Query: 256 K 258
           +
Sbjct: 202 E 202


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 315 NCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLED 470
           N ++ +  +I +  NF+ EK+    K+  G   +N+ K++ E   + N+L+D
Sbjct: 499 NSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKINTLKD 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,042
Number of Sequences: 37544
Number of extensions: 306783
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)