Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0241
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   161   9e-41
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   120   3e-28
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   3.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   6.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.9  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  161 bits (391), Expect = 9e-41
 Identities = 84/141 (59%), Positives = 97/141 (68%)
 Frame = +2

Query: 257 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPS 436
           LT SEKILY HLDDP  Q+IERG SYL+LRPDRVA QDATAQMA+LQF+S+G+P VAVP 
Sbjct: 59  LTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPV 118

Query: 437 TIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLPELKYGVGFWKPGLLVFIHQIILEKL 616
           T+HCDHLIEA  GG  DL RA    K+   F +    KY +GFW+PG  + IHQI+LE  
Sbjct: 119 TVHCDHLIEAYEGGPIDLERANVTNKEVYDFLQTACAKYNIGFWRPGSGI-IHQIVLENY 177

Query: 617 CVSLXYS*FGTDSPHTXMEGG 679
                    GTDS HT   GG
Sbjct: 178 AFPGGLL-IGTDS-HTPNAGG 196



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
 Frame = +3

Query: 105 VLSEIQQRCFSVSPLTAA--AAQVAMSKFDKVP-LPYEKLTKNLEVVKKRLGR 254
           + ++   R FS +P+ A   A +VAMS F+K   + Y+++  NLE+VKKRL R
Sbjct: 5   IFTQSTLRSFSCAPVAANIDAKKVAMSNFEKNKFINYQRIKDNLEIVKKRLNR 57


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score =  120 bits (288), Expect = 3e-28
 Identities = 68/148 (45%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
 Frame = +2

Query: 254 KLTLSEKILYSHLDDPK------GQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGL 415
           KLTL+EK+LYSHL +P+           RG+ YL+L PDRVAMQDA+AQMA+LQF++ GL
Sbjct: 56  KLTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRVAMQDASAQMALLQFMTCGL 115

Query: 416 PRVAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLPELKYGVGFWKPGLLVFIH 595
            +  +P++IHCDHLI    G   D+  +    K+   F +    KYG+ FW PG  + IH
Sbjct: 116 EKTMIPASIHCDHLIVGHRGANSDIPDSIANNKEIFDFLQSAAKKYGIQFWGPGSGI-IH 174

Query: 596 QIILEKLCVSLXYS*FGTDSPHTXMEGG 679
           QI+LE           GTDS HT   GG
Sbjct: 175 QIVLENYAAPGGMM-LGTDS-HTPNAGG 200


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 101  GGTL*NPTKMFQRISIDRRRGPGGDVQVRQGTLA 202
            GG++ N  +   ++ ID  R PG ++ V QG+ A
Sbjct: 1226 GGSIINKIRKIAQVKIDVPRTPGDEIVVVQGSRA 1259


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 265  QGQFLPSLFLTTSKFFVNFS*GKGTLSNLDIATWAA 158
            Q QF  +++ T +  FV    G G     ++ATW A
Sbjct: 1139 QTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRA 1174


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 SKFDKVPLPYEKLTKNLEVVKKR 245
           +KFD+V +PY+ +  ++E   KR
Sbjct: 396 AKFDEVDMPYDTIWLDIEYASKR 418


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 535 SLKTCILLCEVLSPGQILLASDLGFDQVITMN 440
           SLK C++ CEV+ P   ++ SD     + T N
Sbjct: 395 SLKLCMVECEVVDPEFNIIVSDRWLQPLGTNN 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,031
Number of Sequences: 5004
Number of extensions: 62266
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)