Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0241
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    31   0.88 
06_01_1124 + 9264206-9264234,9264784-9266185                           29   3.5  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     28   6.2  
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951           28   8.2  

>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 120 GFQRVPPLSCYPGHAKLSYSAPWSPD 43
           GF+R+P L C+P   +L+    WSP+
Sbjct: 202 GFKRIPSLECWPDVLQLTEPENWSPN 227


>06_01_1124 + 9264206-9264234,9264784-9266185
          Length = 476

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 622 FPGLLMIRHRLPTHL-NGGWALGGNC 696
           F G  ++R   PTH  NGGW  GG C
Sbjct: 344 FNGTAILRTVAPTHYENGGWFDGGEC 369


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 613 FLQN--DLMDKYQKPGLPEXDSIF*LRQSLKTCILLCEVLSPGQILL 479
           FLQN  D  DK Q P LP+   I        TC+L C+   PG ++L
Sbjct: 409 FLQNPRDFDDKIQLPHLPQDVHIS------STCLLSCKPTMPGCVVL 449


>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
          Length = 563

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 210 FRKARVPCRTWTSPPGPRRRSME 142
           FR+AR   R +TSPP P+RR  E
Sbjct: 160 FREARASSRRFTSPP-PKRRGSE 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,887,175
Number of Sequences: 37544
Number of extensions: 499138
Number of successful extensions: 1233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)