Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0241
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               93   2e-19
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   6.3  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     28   6.3  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    28   8.4  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 50/93 (53%), Positives = 60/93 (64%)
 Frame = +2

Query: 407 SGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLPELKYGVGFWKPGLLV 586
           S   +VAVPSTIHCDHLIEA+ GG +DLA+AKD+ K+  +F      KYGVGFWKPG  +
Sbjct: 102 SSWQKVAVPSTIHCDHLIEAKDGGSQDLAKAKDINKEVYNFLATASAKYGVGFWKPGSGI 161

Query: 587 FIHQIILEKLCVSLXYS*FGTDSPHTXMEGGPW 685
            IHQI+LE           GTDS HT   G P+
Sbjct: 162 -IHQIVLENYAFP-GVMLIGTDS-HTPNGGEPY 191


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = +2

Query: 332 YLRLRPDRVA-MQDATAQMAMLQFISSGLPRVAVPSTIHC---DHLIEAQVGGEKDLARA 499
           +LR+R +R   ++ AT     LQ + SG  RV VP ++     DHL  + +GGE  L RA
Sbjct: 468 HLRIREERPRQLKKATETDDTLQTLKSG-ERVIVPESMRKEIKDHLHISHLGGESMLRRA 526

Query: 500 KD 505
           ++
Sbjct: 527 RE 528


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 395  VTLPFVQWRLAWPHGRDAGGDNLRRVQFPVLWGHPS 288
            +TLP  +W++A+  G     +N R+V + VL+G  S
Sbjct: 943  LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 424 YTGKAGRDKL*HCHLCSGVLHG 359
           + G AG+DK+  C +CS   HG
Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHG 845


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 424 YTGKAGRDKL*HCHLCSGVLHG 359
           + G AG+DK+  C +CS   HG
Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHG 186


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 190 LSNLDIATWAAAAVNGDTLKH 128
           L N+ IATWA    N +T KH
Sbjct: 142 LRNVAIATWALVLANSNTFKH 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,621,917
Number of Sequences: 59808
Number of extensions: 503605
Number of successful extensions: 1203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)