Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0241
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...   191   5e-49
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...   130   1e-30
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    75   4e-14
U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score =  191 bits (465), Expect = 5e-49
 Identities = 101/141 (71%), Positives = 107/141 (75%)
 Frame = +2

Query: 257 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPS 436
           LTLSEKILY HLD PK Q+IERG SYLRLRPDRVAMQDATAQMAMLQFISSGLP+ AVPS
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPKTAVPS 119

Query: 437 TIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLPELKYGVGFWKPGLLVFIHQIILEKL 616
           TIHCDHLIEAQ GG +DLARAKDL K+  +F      KYGVGFWKPG  + IHQIILE  
Sbjct: 120 TIHCDHLIEAQKGGAQDLARAKDLNKEVFNFLATAGSKYGVGFWKPGSGI-IHQIILENY 178

Query: 617 CVSLXYS*FGTDSPHTXMEGG 679
                    GTDS HT   GG
Sbjct: 179 AFP-GLLLIGTDS-HTPNGGG 197



 Score = 34.7 bits (76), Expect = 0.064
 Identities = 17/32 (53%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 162 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGR 254
           ++VA+SKF+ K  LPYEKL++ +++VK RL R
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKR 58


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score =  130 bits (313), Expect = 1e-30
 Identities = 71/106 (66%), Positives = 76/106 (71%)
 Frame = +2

Query: 362 MQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLP 541
           MQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG +DLARAKDL K+  +F    
Sbjct: 1   MQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNFLATA 60

Query: 542 ELKYGVGFWKPGLLVFIHQIILEKLCVSLXYS*FGTDSPHTXMEGG 679
             KYGVGFWKPG  + IHQIILE           GTDS HT   GG
Sbjct: 61  GSKYGVGFWKPGSGI-IHQIILENYAFP-GLLLIGTDS-HTPNGGG 103


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 36/44 (81%), Positives = 37/44 (84%)
 Frame = +2

Query: 257 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMA 388
           LTLSEKILY HLD PK Q+IERG SYLRLRPDRVAMQDA   MA
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDAVDVMA 103



 Score = 34.7 bits (76), Expect = 0.064
 Identities = 17/32 (53%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 162 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGR 254
           ++VA+SKF+ K  LPYEKL++ +++VK RL R
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKR 58


>U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical
           protein C13E3.1 protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 186 DKVPLPYEKLTKNLEVVKKR----LGRN*PCLRKSYILTWMTPKDRKLNAAQVISACVPT 353
           +  P P+ + T+ LE ++K+    LG     +   ++L W   KD  L A  + + CV  
Sbjct: 250 ETAPKPFFR-TETLETIQKKKMRKLGWIDSNIESKHVLWWNNAKDELLTARAIANHCVKI 308

Query: 354 VWPCKTPLHKWQCY 395
                 P   ++ Y
Sbjct: 309 TGDSSEPFATFEEY 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,791
Number of Sequences: 27780
Number of extensions: 368958
Number of successful extensions: 861
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)