Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0236
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0419 - 17783202-17784938                                         29   1.8  
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771...    29   2.4  
05_05_0345 - 24237991-24238868,24238956-24239307                       27   9.9  
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084...    27   9.9  

>10_08_0419 - 17783202-17784938
          Length = 578

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 266 DAANSIMGIVVENIEPHIHWKPQLIDGILKYGDRVHTMSLPRASAPPGLRPN 421
           DA + I G+   N+EP +     LID   + G     M++  A A  G+ PN
Sbjct: 352 DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403


>03_05_0586 -
           25875703-25876332,25876426-25876713,25877064-25877194,
           25877299-25877812
          Length = 520

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
 Frame = +2

Query: 173 HGPHXPRPSFGXRKTG------------TRRGILFRASERDHQDAANSIMGIVVENI 307
           HGPH P P FG    G             R G L+ A  R   D A   + + V NI
Sbjct: 253 HGPHWPLPPFGESSRGPFNILEQRPRFANRHGRLYEADARSFHDLAEHDIRVAVVNI 309


>05_05_0345 - 24237991-24238868,24238956-24239307
          Length = 409

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 259 SPGRGELYNGXSGREHRTSHPLEAAADRRNPQVRXQGPHDVSAQSFCSARTTPQRDYRPV 438
           SP    L N   GR H ++   E   D+  P+ R  G  + +A    +  T      RP+
Sbjct: 274 SPKIRRLVNAMLGRRHGSATASEEHPDKAKPE-RVDGEGEAAAAKQGAPET------RPL 326

Query: 439 PRHPILMS 462
           PR+ +L+S
Sbjct: 327 PRNGVLIS 334


>04_04_1536 -
           34207425-34207490,34207801-34208268,34208345-34208485,
           34208582-34208820,34209950-34210436
          Length = 466

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 403 RSRSSGQRHRVDPVXVLEDSVD 338
           RSR++G+R+R D V  L +SVD
Sbjct: 125 RSRAAGERYRHDGVEELPESVD 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,089
Number of Sequences: 37544
Number of extensions: 199990
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)