Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0236
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   31   0.82 
SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)                     29   2.5  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 28   4.4  
SB_947| Best HMM Match : Phage_term_smal (HMM E-Value=2.8)             28   4.4  
SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)                     28   5.8  
SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)         28   5.8  
SB_51743| Best HMM Match : DPRP (HMM E-Value=0.4)                      28   5.8  
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_1692| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 152 RLLRGEVHGPHXPRPSFGXRKT---GTRRGILFRASERDHQDAANSIMGIVVENIE 310
           R  RGEVH P  P  + G R+T   G  RG   R   R+  DA     GI  +N+E
Sbjct: 627 RCPRGEVHHPARPFSADGPRRTVPKGALRGDALRDHARNGSDATKLSYGI--KNLE 680


>SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)
          Length = 177

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 161 RGEVHGPHXPRPSFGXRKTGTRRGILFRASERDH 262
           RGEVH P  P  + G R+T   +G L  A+ RDH
Sbjct: 141 RGEVHHPARPFSADGPRRT-VPKGALRGAALRDH 173


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 313 SHPLEAAADRRNPQVRXQGPHDVSAQSFCSARTTPQRDYRPVP 441
           SHPL       NP+   + P      S  +  TT QRD  P P
Sbjct: 802 SHPLAPFTSESNPRPETKVPITTIGASTSAEVTTSQRDLMPSP 844


>SB_947| Best HMM Match : Phage_term_smal (HMM E-Value=2.8)
          Length = 237

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 329 PQLIDGILKYGDRVHTMSLP 388
           PQL+DG+L+ G R+    LP
Sbjct: 124 PQLVDGVLRVGGRIDKADLP 143


>SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)
          Length = 352

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 329 PQLIDGILKYGDRVHTMSLPRASAPP 406
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 220 PQLVDGVLRVGGRIDRADIPWETKHP 245


>SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 329 PQLIDGILKYGDRVHTMSLPRASAPP 406
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 727 PQLVDGVLRVGGRIDRADIPWETKHP 752


>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
          Length = 1012

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 329  PQLIDGILKYGDRVHTMSLPRASAPP 406
            PQL+DG+L+ G R+    +P  +  P
Sbjct: 945  PQLVDGVLRVGGRIDRADIPWETKHP 970


>SB_51743| Best HMM Match : DPRP (HMM E-Value=0.4)
          Length = 281

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 329 PQLIDGILKYGDRVHTMSLPRASAPP 406
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 233 PQLVDGVLRVGGRIDRADIPWETKHP 258


>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 329  PQLIDGILKYGDRVHTMSLPRASAPP 406
            PQL+DG+L+ G R+    +P  +  P
Sbjct: 1144 PQLVDGVLRVGGRIDRADIPWETKHP 1169


>SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 112 VKKMKKXA*WNHWTTPAWGS 171
           VKKM K A WN + T AWGS
Sbjct: 172 VKKMMKHA-WNGYVTYAWGS 190


>SB_1692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 329 PQLIDGILKYGDRVHTMSLPRASAPP 406
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 150 PQLVDGVLRVGGRIDRADIPWETKHP 175


>SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 329 PQLIDGILKYGDRVHTMSLP 388
           PQL+DG+L+ G R+    LP
Sbjct: 176 PQLVDGMLRVGGRIDRADLP 195


>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 329 PQLIDGILKYGDRVHTMSLP 388
           PQL+DG+L+ G R+    +P
Sbjct: 901 PQLVDGVLRVGGRIDRADIP 920


>SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 161 RGEVHGPHXPRPSFGXRKTGTRRGILFRASERDH 262
           RGEVH P  P  + G R+    +G L  A+ RDH
Sbjct: 229 RGEVHHPARPFSADGPRR-AIHKGALRGAALRDH 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,012
Number of Sequences: 59808
Number of extensions: 203997
Number of successful extensions: 570
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)