Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0236
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ898279-1|ABI58280.1| 839|Homo sapiens transient receptor pote... 30 6.1
DQ177333-1|ABA06606.1| 850|Homo sapiens transient receptor pote... 30 6.1
DQ177332-1|ABA06605.1| 837|Homo sapiens transient receptor pote... 30 6.1
BC132820-1|AAI32821.1| 839|Homo sapiens transient receptor pote... 30 6.1
AY986821-1|AAX84657.1| 779|Homo sapiens vanilloid receptor vari... 30 6.1
AY131289-1|AAM89472.1| 839|Homo sapiens vanilloid receptor 1 pr... 30 6.1
AJ277028-1|CAB95729.1| 839|Homo sapiens vanilloid receptor 1 pr... 30 6.1
AJ272063-1|CAB89866.2| 839|Homo sapiens vanilloid receptor 1 pr... 30 6.1
AF196175-1|AAG43466.1| 839|Homo sapiens capsaicin receptor prot... 30 6.1
AY894575-1|AAX85114.1| 1214|Homo sapiens NBPF1 protein. 29 8.1
AF379626-1|AAO15394.1| 502|Homo sapiens AC3 protein. 29 8.1
AF379622-1|AAO15391.1| 358|Homo sapiens AB18 protein. 29 8.1
>DQ898279-1|ABI58280.1| 839|Homo sapiens transient receptor
potential cation channel subfamily V member 1 transcript
var protein.
Length = 839
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 749 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 778
>DQ177333-1|ABA06606.1| 850|Homo sapiens transient receptor
potential vanilloid 1b protein.
Length = 850
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 760 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 789
>DQ177332-1|ABA06605.1| 837|Homo sapiens transient receptor
potential vanilloid 1a protein.
Length = 837
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 747 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 776
>BC132820-1|AAI32821.1| 839|Homo sapiens transient receptor
potential cation channel, subfamily V, member 1 protein.
Length = 839
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 749 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 778
>AY986821-1|AAX84657.1| 779|Homo sapiens vanilloid receptor variant
TRPV1b protein.
Length = 779
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 689 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 718
>AY131289-1|AAM89472.1| 839|Homo sapiens vanilloid receptor 1
protein.
Length = 839
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 749 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 778
>AJ277028-1|CAB95729.1| 839|Homo sapiens vanilloid receptor 1
protein.
Length = 839
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 749 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 778
>AJ272063-1|CAB89866.2| 839|Homo sapiens vanilloid receptor 1
protein.
Length = 839
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 749 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 778
>AF196175-1|AAG43466.1| 839|Homo sapiens capsaicin receptor
protein.
Length = 839
Score = 29.9 bits (64), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 453 NWVTWNWSIISLGRSPGGAEALGRDIVWTL 364
NW TWN ++ + PG E + R + ++L
Sbjct: 749 NWTTWNTNVGIINEDPGNCEGVKRTLSFSL 778
>AY894575-1|AAX85114.1| 1214|Homo sapiens NBPF1 protein.
Length = 1214
Score = 29.5 bits (63), Expect = 8.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 397 RSSGQRHRVDPVXVLEDSVDQLRLPVDVRFDVLDHYXHYR 278
R SG V+ VL+DS+D+ + F++ D + HYR
Sbjct: 1134 RLSGMLMEVEEPEVLQDSLDRCYSTPSMYFELPDSFQHYR 1173
>AF379626-1|AAO15394.1| 502|Homo sapiens AC3 protein.
Length = 502
Score = 29.5 bits (63), Expect = 8.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 397 RSSGQRHRVDPVXVLEDSVDQLRLPVDVRFDVLDHYXHYR 278
R SG V+ VL+DS+D+ + F++ D + HYR
Sbjct: 422 RLSGMLMEVEEPEVLQDSLDRCYSTPSMYFELPDSFQHYR 461
>AF379622-1|AAO15391.1| 358|Homo sapiens AB18 protein.
Length = 358
Score = 29.5 bits (63), Expect = 8.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 397 RSSGQRHRVDPVXVLEDSVDQLRLPVDVRFDVLDHYXHYR 278
R SG V+ VL+DS+D+ + F++ D + HYR
Sbjct: 278 RLSGMLMEVEEPEVLQDSLDRCYSTPSMYFELPDSFQHYR 317
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,247,297
Number of Sequences: 237096
Number of extensions: 984770
Number of successful extensions: 2913
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2913
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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