Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0236
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi...    29   1.5  
At5g46100.1 68418.m05668 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At1g01730.1 68414.m00092 expressed protein                             29   2.7  
At4g20090.1 68417.m02938 pentatricopeptide (PPR) repeat-containi...    28   3.6  
At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containi...    28   3.6  
At3g49307.1 68416.m05390 Expressed protein                             27   8.3  

>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 946

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 221 TRRGILFRASERDHQDAANSIMGIVVEN-IEPHIHWKPQLIDGILKYGDRVHTMSLPRAS 397
           T   ++ R  +   QD A+ ++  ++EN   P++    ++IDG+ K G       L +  
Sbjct: 670 TYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 729

Query: 398 APPGLRPNEI 427
              G +PN +
Sbjct: 730 EEKGCQPNVV 739


>At5g46100.1 68418.m05668 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 472

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 299 ENIEPHIHWKPQLIDGILKYGDRVHTMSLPRASAPPGLRPNEI 427
           + IEP++     L+DG+ K G  +  M L       G RPN +
Sbjct: 256 KGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV 298


>At1g01730.1 68414.m00092 expressed protein
          Length = 224

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 247 IGTXSPGRGELYNGXSGREHRTSHPL 324
           I +  PG   +Y+G S  E+R+SHP+
Sbjct: 186 ITSGGPGTEPVYSGMSKEEYRSSHPI 211


>At4g20090.1 68417.m02938 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 251 ERDHQDAANSIMGIVVENIEPHIHWKPQLIDGILKYGDRVHTMSLPRASAPPGLRPNEII 430
           +R   DA   +  +       + H    LI G+ K G     MSL R  A  G +PN ++
Sbjct: 340 QRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVV 399


>At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 825

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 296 VENIEPHIHWKPQLIDGILKYGDRVHTMSLPRASAPPGLRPNEI 427
           +E +EP++     LIDG  K G  V    L R      + PN+I
Sbjct: 708 MEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKI 751


>At3g49307.1 68416.m05390 Expressed protein
          Length = 76

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 149 GRLLRGEVHGPHXPRP 196
           GR   G  HGPH PRP
Sbjct: 54  GRRYPGRPHGPHAPRP 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,049,609
Number of Sequences: 28952
Number of extensions: 146162
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)