Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0233
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium (Vinck...    32   6.2  
UniRef50_Q8Y5Y9 Cluster: Lmo1914 protein; n=13; Listeria|Rep: Lm...    32   8.2  
UniRef50_Q4AFK3 Cluster: O-succinylbenzoic acid--CoA ligase; n=1...    32   8.2  

>UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium
           (Vinckeia)|Rep: Var1p, putative - Plasmodium yoelii
           yoelii
          Length = 397

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 17  EYPCNYVYKVFILNTILLFFRTLSCKYL*LFRYFSLKMD 133
           +Y  NY  ++FI+NT+  FF T+S   +   +YF  +++
Sbjct: 244 QYEDNYTKELFIINTLKYFFSTISNSIIQNIKYFEKEIE 282


>UniRef50_Q8Y5Y9 Cluster: Lmo1914 protein; n=13; Listeria|Rep:
           Lmo1914 protein - Listeria monocytogenes
          Length = 227

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -2

Query: 141 LFISIFNEKYLNNYKYLHDSVLKNRRIVF 55
           LF++I  + +L N + LHD++L N +IVF
Sbjct: 83  LFVNISYDTFLENQEELHDTLLDNGKIVF 111


>UniRef50_Q4AFK3 Cluster: O-succinylbenzoic acid--CoA ligase; n=1;
           Chlorobium phaeobacteroides BS1|Rep: O-succinylbenzoic
           acid--CoA ligase - Chlorobium phaeobacteroides BS1
          Length = 362

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 307 IIVQEHDSQPQEKVCSTTKDVFWDRSKIRLLLKLCLEDRFKNINXQK 447
           I+  E+D     ++CS  K + +  +K  LL ++C  DRFK     K
Sbjct: 302 ILCLENDGDLLSQICSIWKTIEYQCNKSHLLREICFIDRFKRTETGK 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,616,793
Number of Sequences: 1657284
Number of extensions: 8158790
Number of successful extensions: 20646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20637
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)