Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0232
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 143 1e-35
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 143 1e-35
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 143 1e-35
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 143 1e-35
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 143 1e-35
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 83 2e-17
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 1e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 6e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 1e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.1
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 5.7
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 7.6
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 7.6
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 24 10.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 10.0
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 93.1 bits (221), Expect = 1e-20
Identities = 40/48 (83%), Positives = 41/48 (85%)
Frame = +1
Query: 256 RGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNGL 399
RGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN L
Sbjct: 74 RGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQL 121
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 93.1 bits (221), Expect = 1e-20
Identities = 40/48 (83%), Positives = 41/48 (85%)
Frame = +1
Query: 256 RGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNGL 399
RGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN L
Sbjct: 74 RGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQL 121
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 137 IQKESTLHLVLRL 149
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 213 IQKESTLHLVLRL 225
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 289 IQKESTLHLVLRL 301
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 365 IQKESTLHLVLRL 377
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 143 bits (346), Expect = 1e-35
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
MQIFV TLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRL 256
IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 82.6 bits (195), Expect = 2e-17
Identities = 36/73 (49%), Positives = 52/73 (71%)
Frame = +2
Query: 38 MQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
M I V TLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 218 IQKESTLHLVLRL 256
++ S LHLVL L
Sbjct: 61 LEGGSVLHLVLAL 73
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 1e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +2
Query: 68 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 229
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 41.1 bits (92), Expect = 6e-05
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +2
Query: 65 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 244
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL +
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATLLM 69
Query: 245 VLRLEEXQLNLP 280
+ E +P
Sbjct: 70 MGTAGELPTAMP 81
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 1e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 86 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 256
V++ ++ +K I I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 1.1
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 41 QIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 214
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 215 NIQKESTLHLVLRL-EEXQLNLPFAFS 292
+ T HLV+ + LP A S
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATS 91
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 5.7
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +2
Query: 59 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 229
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 230 STLH 241
LH
Sbjct: 154 QVLH 157
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 7.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 201 LFQTITSRKNPHFTW 245
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 107 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 226
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 321 NHFLTVILHGENAKGRFNCXSSSLKTR*SV 232
NH +T+ LH +G FN +L SV
Sbjct: 124 NHIITMDLHASQIQGFFNVPVDNLYAEPSV 153
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 191 DGRTLSDYNIQKESTLHLVLRLE 259
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,445
Number of Sequences: 5004
Number of extensions: 32063
Number of successful extensions: 96
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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