Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0232
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.10 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.56 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   3.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.10
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 95  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 205
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 91  SFRHYRKCQS*NPRQGRYSSRPTTSHLCRETIRRWPHS 204
           S +H  KC +       +SS P  +H CR     W HS
Sbjct: 162 SVKHVAKCAT------DFSSWPYDTHRCRINFGSWVHS 193


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
 Frame = +1

Query: 304 NCEKMI-CRKCYARLHPR 354
           NCE      KCYA L PR
Sbjct: 123 NCEYAYRFNKCYAELSPR 140


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 295 WRECEGKV 272
           W++CEGK+
Sbjct: 200 WKQCEGKI 207


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 269 IVPPLVSKPGEVWILSGCYSLKECGHLLIVSRQR*DVV 156
           ++  LV     +WI S   SL+   ++ IVS    D++
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 230 STLHLVLRLEEXQLNLPFAFSP 295
           STL+ + R E  +L  PF  SP
Sbjct: 496 STLYKIARREGIRLAAPFNASP 517


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 269 IVPPLVSKPGEVWILSGCYSLKECGHLLIVSRQR*DVV 156
           ++  LV     +WI S   SL+   ++ IVS    D++
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 14/72 (19%), Positives = 29/72 (40%)
 Frame = +2

Query: 32   NTMQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 211
            N+++  +       +  + ++ DT E  K  +Q KEG     Q+  F G  L     + +
Sbjct: 912  NSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDE 971

Query: 212  YNIQKESTLHLV 247
                   T+ ++
Sbjct: 972  LKPATRYTIRVI 983


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 14/72 (19%), Positives = 29/72 (40%)
 Frame = +2

Query: 32   NTMQIFVXTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 211
            N+++  +       +  + ++ DT E  K  +Q KEG     Q+  F G  L     + +
Sbjct: 908  NSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDE 967

Query: 212  YNIQKESTLHLV 247
                   T+ ++
Sbjct: 968  LKPATRYTIRVI 979


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 1   VIXFTCGLF*QHN 39
           +  F CG+F +HN
Sbjct: 670 ITLFVCGVFLKHN 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,213
Number of Sequences: 438
Number of extensions: 2219
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)