Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0230
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855...    27   4.1  
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    27   5.5  
11_04_0009 - 12132781-12133272                                         26   9.5  
01_01_0595 - 4430738-4430785,4430904-4432679                           26   9.5  

>01_06_1664 -
           38984545-38984615,38984706-38984802,38985362-38985523,
           38985736-38985825,38986125-38986226,38986373-38986446,
           38986587-38986615,38986766-38986989
          Length = 282

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 178 CSCPFXQFS*RSSTWAREQHWSCSKP 101
           CS     FS +   WA E+H +CS P
Sbjct: 126 CSSSSTCFSGKGPFWAHEKHGTCSSP 151


>11_01_0374 -
           2843405-2843508,2844134-2844239,2844327-2844409,
           2844886-2845078,2845527-2845662,2846185-2846264,
           2846348-2846932,2847058-2847126,2847203-2847347,
           2847442-2847542,2848208-2849066,2849397-2849536,
           2849606-2849783,2849885-2850287,2850770-2850833,
           2851223-2851278,2851470-2851572
          Length = 1134

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 195 DDAVTDVPAHFXNFLEDLPXGLGSSTGHAQSQHQSEDE 82
           DDA+ D+   F    + L   +G+S   A S H +E++
Sbjct: 759 DDAMDDIVRQFKGVSDGLKRAVGTSPTSAPSSHLAENQ 796


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 148 RSSTWAREQHWSCSKPAPERRRRIGSLR 65
           R   W RE+  S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 226 NRGPRSPGPL*RCRHGCSCPFXQFS*RSSTWAREQHWSCSKPAPE 92
           ++G + P P  RC   C CP    + + +T AR  H +C+   PE
Sbjct: 463 SKGNKPPPPPPRC---CLCPARGGAMKRTTDARWAHIACALLVPE 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,536,889
Number of Sequences: 37544
Number of extensions: 154114
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)