Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0222
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  30   1.4  
SB_35141| Best HMM Match : p450 (HMM E-Value=0)                        29   3.3  

>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 60  VDVDDLMRRYTNXVIASAGFGLQVNSLVDKDNXF 161
           +D++D ++R    ++    FG+++NS+ D +  F
Sbjct: 187 IDMEDFVKRMALDIMGKVAFGIKINSIEDPNTPF 220


>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
          Length = 565

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = +3

Query: 18  KNIVEYLKGHQLEDVDVDDLMRRYTNXVIASAGFGLQVNSLVDKDNXFXECXQXMFSTSX 197
           K+I+ Y      E VD+  +  + T  VI S  FG+      + +N F +  + +F +  
Sbjct: 232 KSILYYESESNGESVDILGMFCQMTLEVILSTAFGIDSEVQKNPNNTFSDKAKEIFKS-- 289

Query: 198 PQRFKMILAAQFPTLAKKXXXXYFH 272
           P   +M L   F ++  K      H
Sbjct: 290 PTFLRMFLMLPFASVFFKIFRFLIH 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,690,784
Number of Sequences: 59808
Number of extensions: 133857
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)