Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0221
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   0.68 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   0.68 
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    29   0.68 
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    27   1.6  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   1.6  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.3  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.4  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   8.4  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +1

Query: 226  RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
            RDGKY IAA+  E  KY  T W++     M+  ++++   VR  +AS   M+ E C    
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567

Query: 400  SLANC 414
            S ANC
Sbjct: 1568 SFANC 1572


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +1

Query: 226  RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
            RDGKY IAA+  E  KY  T W++     M+  ++++   VR  +AS   M+ E C    
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567

Query: 400  SLANC 414
            S ANC
Sbjct: 1568 SFANC 1572


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 169 QPWQEWSDHYTCHRYR-CEIRDGKYFIAAVDVENQKYRK 282
           + +++W+   T + +R C+  D ++F+ A   +N+KY+K
Sbjct: 97  EAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYKK 135


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 225 QRREILHSCCGCRKPKIPENALECHEYIEDENVEFPT 335
           +RR  LH      +P       ECHE I++E+V+ P+
Sbjct: 79  KRRIWLHGVLRFHRPLHLFQTSECHELIQEESVKSPS 115


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 PWQEWSDHYTCHRYRCEIRDG 234
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 255  GCRKPKIPENALECHEYIEDEN 320
            G  K  IP+N  EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +3

Query: 366 VNGERIVQTRGQ--PXELFPDKPWKGQQNEPNPAVXGMSGIQQTPVGGEP 509
           VNG  +    G   P  ++P  P +     P P   GM+     P  G P
Sbjct: 495 VNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRP 544


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 476 AHSXNSRIWLVLLALPWFIGEQFARLPSGLHYSLSIYF 363
           AH  +  I L +++LPWF+      +P    + L  +F
Sbjct: 367 AHFVSKDIQLSIISLPWFLSLFLCTMPLPYAFRLLDFF 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,419
Number of Sequences: 5004
Number of extensions: 53722
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)