Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0221
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98507-1|CAA67131.1| 1028|Homo sapiens myosin I beta protein. 32 1.3
BC068013-1|AAH68013.1| 1028|Homo sapiens myosin IC protein. 32 1.3
BC044891-1|AAH44891.2| 1028|Homo sapiens MYO1C protein protein. 32 1.3
AB210015-1|BAE06097.1| 1097|Homo sapiens MYO1C variant protein p... 32 1.3
U43318-1|AAC50385.1| 585|Homo sapiens transmembrane receptor pr... 30 7.2
AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 7.2
AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 7.2
AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven... 30 7.2
AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo ... 30 7.2
AC096772-3|AAY24058.1| 585|Homo sapiens unknown protein. 30 7.2
AB043702-1|BAB60959.1| 585|Homo sapiens seven-transmembrane rec... 30 7.2
>X98507-1|CAA67131.1| 1028|Homo sapiens myosin I beta protein.
Length = 1028
Score = 32.3 bits (70), Expect = 1.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 97 VLPALSAEDVSYQACVDKYSRKGYQP 174
VL AL +E + Y V KY RKGY+P
Sbjct: 875 VLQALGSEPIQYAVPVVKYDRKGYKP 900
>BC068013-1|AAH68013.1| 1028|Homo sapiens myosin IC protein.
Length = 1028
Score = 32.3 bits (70), Expect = 1.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 97 VLPALSAEDVSYQACVDKYSRKGYQP 174
VL AL +E + Y V KY RKGY+P
Sbjct: 875 VLQALGSEPIQYAVPVVKYDRKGYKP 900
>BC044891-1|AAH44891.2| 1028|Homo sapiens MYO1C protein protein.
Length = 1028
Score = 32.3 bits (70), Expect = 1.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 97 VLPALSAEDVSYQACVDKYSRKGYQP 174
VL AL +E + Y V KY RKGY+P
Sbjct: 875 VLQALGSEPIQYAVPVVKYDRKGYKP 900
>AB210015-1|BAE06097.1| 1097|Homo sapiens MYO1C variant protein
protein.
Length = 1097
Score = 32.3 bits (70), Expect = 1.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 97 VLPALSAEDVSYQACVDKYSRKGYQP 174
VL AL +E + Y V KY RKGY+P
Sbjct: 944 VLQALGSEPIQYAVPVVKYDRKGYKP 969
>U43318-1|AAC50385.1| 585|Homo sapiens transmembrane receptor
protein.
Length = 585
Score = 29.9 bits (64), Expect = 7.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 533 IFQETPDPGLATDRCLLDAAHSXNSRIWLVLLALPWFI 420
I ET P L T LL S IW V+L+L WF+
Sbjct: 305 IHYETTGPALCTIVFLLVYFFGMASSIWWVILSLTWFL 342
>AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 374 RENSANQRAAXRTVPR*TMEGPTKRAKSCCXRNERHPADTGRW 502
+E + A RT P+ T GP ++ R RHP D G++
Sbjct: 2294 KEGPLLRPAGRRTTPQTTRPGPGTEREAPISRRRRHPDDAGQF 2336
>AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 374 RENSANQRAAXRTVPR*TMEGPTKRAKSCCXRNERHPADTGRW 502
+E + A RT P+ T GP ++ R RHP D G++
Sbjct: 2294 KEGPLLRPAGRRTTPQTTRPGPGTEREAPISRRRRHPDDAGQF 2336
>AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 29.9 bits (64), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 374 RENSANQRAAXRTVPR*TMEGPTKRAKSCCXRNERHPADTGRW 502
+E + A RT P+ T GP ++ R RHP D G++
Sbjct: 2294 KEGPLLRPAGRRTTPQTTRPGPGTEREAPISRRRRHPDDAGQF 2336
>AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo 2
protein.
Length = 3014
Score = 29.9 bits (64), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 374 RENSANQRAAXRTVPR*TMEGPTKRAKSCCXRNERHPADTGRW 502
+E + A RT P+ T GP ++ R RHP D G++
Sbjct: 2294 KEGPLLRPAGRRTTPQTTRPGPGTEREAPISRRRRHPDDAGQF 2336
>AC096772-3|AAY24058.1| 585|Homo sapiens unknown protein.
Length = 585
Score = 29.9 bits (64), Expect = 7.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 533 IFQETPDPGLATDRCLLDAAHSXNSRIWLVLLALPWFI 420
I ET P L T LL S IW V+L+L WF+
Sbjct: 305 IHYETTGPALCTIVFLLVYFFGMASSIWWVILSLTWFL 342
>AB043702-1|BAB60959.1| 585|Homo sapiens seven-transmembrane
receptor Frizzled-5 protein.
Length = 585
Score = 29.9 bits (64), Expect = 7.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 533 IFQETPDPGLATDRCLLDAAHSXNSRIWLVLLALPWFI 420
I ET P L T LL S IW V+L+L WF+
Sbjct: 305 IHYETTGPALCTIVFLLVYFFGMASSIWWVILSLTWFL 342
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,539,135
Number of Sequences: 237096
Number of extensions: 2260235
Number of successful extensions: 9397
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9397
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -