Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0220
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    63   2e-10
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...    29   2.4  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/77 (37%), Positives = 50/77 (64%)
 Frame = +3

Query: 297 IGTQLILPYRGDFYDAXRLKVCGDLGXVLFTPYHLXDEESIAKXXRYSNGVINLVGRDYE 476
           +G+Q+++P+RG       LK+ GDLG ++   Y+  D +SI      SN VINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 477 TKXFXYNDVHXXVLEEL 527
           T+ + +++V+  + E+L
Sbjct: 61  TRNYGFDEVNHHMAEQL 77


>06_01_0977 +
           7585817-7585970,7586057-7586146,7586500-7586702,
           7587274-7587452,7587913-7587991,7588403-7588537,
           7588651-7588800,7588887-7588997,7589084-7590004,
           7590351-7590623,7590853-7591062,7591425-7591573,
           7591716-7592052
          Length = 996

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 279 THXVRQIRSTENCGYDAVKATAATSTSLICCKXGFTIRTVVSGFDV 142
           T  V+ I  TE  GYD++ ATA     L+    G ++  V  G DV
Sbjct: 552 TEIVKSIPDTEFLGYDSLSATAVVKGLLV---NGNSVNVVSEGSDV 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,563,036
Number of Sequences: 37544
Number of extensions: 229004
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)