Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0220
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   8e-25
SB_32398| Best HMM Match : PspC (HMM E-Value=1.4)                      27   7.6  
SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)               27   7.6  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score =  110 bits (264), Expect = 8e-25
 Identities = 48/100 (48%), Positives = 71/100 (71%)
 Frame = +3

Query: 246 FRLTGFVGRXVCNKLGKIGTQLILPYRGDFYDAXRLKVCGDLGXVLFTPYHLXDEESIAK 425
           F  TGF+GR V N+LG++GTQL +PYRGD +D   L++ GDLG + F  +HL DEESIAK
Sbjct: 26  FGATGFLGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLGQIDFFDFHLKDEESIAK 85

Query: 426 XXRYSNGVINLVGRDYETKXFXYNDVHXXVLEELPESAEK 545
             ++SN V+NL+GR +ET+ F + +VH      + ++A++
Sbjct: 86  MVKHSNVVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKE 125



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 196 KRGTGGRSSFNGIVATVFG 252
           K+GTGGRSSFNG+ ATVFG
Sbjct: 9   KKGTGGRSSFNGVSATVFG 27


>SB_32398| Best HMM Match : PspC (HMM E-Value=1.4)
          Length = 203

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 234 DAVKATAATSTSLICCKXGFTIRTVVSGFDVHNTHRP 124
           D V+       ++I C   FT+  V  GFD++ T  P
Sbjct: 67  DLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 103


>SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)
          Length = 512

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 234 DAVKATAATSTSLICCKXGFTIRTVVSGFDVHNTHRP 124
           D V+       ++I C   FT+  V  GFD++ T  P
Sbjct: 301 DLVRTPKLRRWTIITCYNWFTVSLVYFGFDLYTTQLP 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,178
Number of Sequences: 59808
Number of extensions: 271199
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)