Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0220
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    87   1e-17
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 43/87 (49%), Positives = 55/87 (63%)
 Frame = +3

Query: 246 FRLTGFVGRXVCNKLGKIGTQLILPYRGDFYDAXRLKVCGDLGXVLFTPYHLXDEESIAK 425
           F  +GF+G  V NK  K G+Q+I+PYR D Y     KV G+LG VL+ P+ L DEESI K
Sbjct: 65  FGASGFLGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRK 124

Query: 426 XXRYSNGVINLVGRDYETKXFXYNDVH 506
             +YSN VINL+G    T  + Y DV+
Sbjct: 125 AVKYSNVVINLIGTRVPTGKYNYYDVN 151



 Score = 35.1 bits (77), Expect = 0.034
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 94  QATSKLLHLNGSMSVVYIKAANYSSDRKPXLAAYKRGTGGRSSFNGIVATVFG 252
           QA S +   N S +V   + A+         A +++G GGR+SF+G V TVFG
Sbjct: 14  QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFG 66


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 248 SVDRICRTXCVQQIGKNWYPVNFTIQRRFL*CPXVESVRRFRPXPV 385
           S   +C    +  I +  Y VN T+Q   + CP VES    +P PV
Sbjct: 656 STKSLCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPV 701


>AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.5 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +3

Query: 36  INKSYHNI*AIKWLRYTKNSSY*QITSFEWVYECCV 143
           +N +   +  +  + YT+ S   Q++ + W + CC+
Sbjct: 117 LNPTIDEVIRLNKVEYTRKSQNHQMSFYNWAFHCCL 152


>AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical
           protein F38G1.3 protein.
          Length = 201

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -3

Query: 327 LCMVKLTGYQFFPIC----CTHXVRQIRSTENCGYDAVKATAATSTSLICC 187
           +C++  T  QF P+     CT+ V    + E+C  D ++      +SLI C
Sbjct: 13  ICLLT-TAVQFIPLSSTINCTYCVEARSTYEHCFKDVIECAYRDPSSLIIC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,644
Number of Sequences: 27780
Number of extensions: 207411
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)